rTandem compilation failed
1
1
Entering edit mode
Ed Siefker ▴ 230
@ed-siefker-5136
Last seen 6 months ago
United States

Trying to install rTandem on Debian Sid.  I get this error:

 

g++  -I/usr/share/R/include -DNDEBUG  -I"/home/hatta/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-PbieFK/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c loadmspectrum.cpp -o loadmspectrum.o
loadmspectrum.cpp: In member function ‘virtual bool loadpkl::get(mspectrum&)’:
loadmspectrum.cpp:685:18: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
     if(pValue != '\0' && strlen(pValue) > 2) {
                  ^~~~
loadmspectrum.cpp: In member function ‘virtual bool loaddta::get(mspectrum&)’:
loadmspectrum.cpp:875:18: error: ISO C++ forbids comparison between pointer and integer [-fpermissive]
     if(pValue != '\0' && strlen(pValue) > 2) {
                  ^~~~
make: *** [/usr/lib/R/etc/Makeconf:168: loadmspectrum.o] Error 1
ERROR: compilation failed for package ‘rTANDEM’
* removing ‘/home/hatta/R/x86_64-pc-linux-gnu-library/3.4/rTANDEM’

This is my sessionInfo():

> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux buster/sid

Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0

locale:
 [1] LC_CTYPE=en_US.utf8       LC_NUMERIC=C             
 [3] LC_TIME=en_US.utf8        LC_COLLATE=en_US.utf8    
 [5] LC_MONETARY=en_US.utf8    LC_MESSAGES=en_US.utf8   
 [7] LC_PAPER=en_US.utf8       LC_NAME=C                
 [9] LC_ADDRESS=C              LC_TELEPHONE=C           
[11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C      

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.28.0

loaded via a namespace (and not attached):
[1] compiler_3.4.4 tools_3.4.4   

 

 

rtandem bug compilation error • 681 views
ADD COMMENT
0
Entering edit mode
Ed Siefker ▴ 230
@ed-siefker-5136
Last seen 6 months ago
United States

For anyone else who has this problem, the solution I found was:

 

echo -e "CC=gcc-6\nCXX=G++-6" > ~/.R/Makevars
ADD COMMENT

Login before adding your answer.

Traffic: 291 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6