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Question: Horizontal integration of multi omic data, with continuous dependent variable
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gravatar for dberel
12 weeks ago by
dberel20
dberel20 wrote:

Horizontal integration of multi omic data is combining and integrating independent studies measured on the same P predictors (e.g. genes).

mixOmics/MINT suggest such method with a binary dependent variable, though I look for a continuous one (regression).

Any suggestions?

Dror.

ADD COMMENTlink modified 12 weeks ago by Levi Waldron690 • written 12 weeks ago by dberel20
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gravatar for Levi Waldron
12 weeks ago by
Levi Waldron690
CUNY Graduate School of Public Health and Health Policy, New York, NY
Levi Waldron690 wrote:

I'm not totally clear on what your goal is, but it sounds possibly you want to do regression on a continuous dependent variable. If that's the case, you might check out:

MultiAssayExperiment's intersectColumns(), intersectRows(), assays(), wideFormat(), longFormat(), and subsetting methods should allow you to get to the formats and data required by any of these packages pretty efficiently.

ADD COMMENTlink written 12 weeks ago by Levi Waldron690
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