Horizontal integration of multi omic data, with continuous dependent variable
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dberel ▴ 20
@dberel-13083
Last seen 3.5 years ago

Horizontal integration of multi omic data is combining and integrating independent studies measured on the same P predictors (e.g. genes).

mixOmics/MINT suggest such method with a binary dependent variable, though I look for a continuous one (regression).

Any suggestions?

Dror.

multiassayexperiment multiomics • 557 views
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Entering edit mode
@levi-waldron-3429
Last seen 10 weeks ago
CUNY Graduate School of Public Health a…

I'm not totally clear on what your goal is, but it sounds possibly you want to do regression on a continuous dependent variable. If that's the case, you might check out:

MultiAssayExperiment's intersectColumns(), intersectRows(), assays(), wideFormat(), longFormat(), and subsetting methods should allow you to get to the formats and data required by any of these packages pretty efficiently.

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