Bioconductor Multiomics

Showing : multiomics • reset

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DimensionReduction SingleCellData multiomics MachineLearning

2.4 years ago Diego's • 0

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Multiomics Proteomics Cancer Statistics Bioinformatics

2.8 years ago Andy Lynch ▴ 120

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clinical R bioinformatics multiomics oncology

3.1 years ago vincent.piras • 0

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JobPosting postdoc sequencing multiomics

4.3 years ago • updated 4.2 years ago lhd • 0

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multiomics single-cell RNA Job

5.6 years ago mahes.muniandy • 0

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curatedTCGAData MultiAssayExperiment multiomics TCGA

updated 6.1 years ago by Levi Waldron ★ 1.1k • written 6.1 years ago by svlachavas ▴ 840

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multiassayexperiment multiomics

updated 6.9 years ago by Levi Waldron ★ 1.1k • written 6.9 years ago by dberel ▴ 20

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MultiAssayExperiment curatedCRCdata multiomics TCGA

updated 6.9 years ago by Marcel Ramos 700 • written 6.9 years ago by svlachavas ▴ 840

8 results • Page 1 of 1

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Answer: Heatmap of rnaseq data with z-score scale by James W. MacDonald 68k

Without including the row names for the heatmap, it's impossible to know if the directionality is switched or not. Do note that the orderin…

Comment: Heatmap of rnaseq data with z-score scale by giovanna • 0

![Figure1][1]![Figure2][2] [1]: /media/images/d62918c5-2886-44ae-930d-91d292c3 [2]: /media/images/421df232-8a9c-4016-bc4a-431ca57a

Comment: parameters of filterByExpr by caroline.zanchi ▴ 10

Ah yes sorry :) But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…

Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by caroline.zanchi ▴ 10

Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…

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Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

Awards • All

Scholar to James W. MacDonald 68k