Question: reload IGV exported feature to Gviz
0
gravatar for ta_awwad
16 months ago by
ta_awwad10
Frankfurt am Main
ta_awwad10 wrote:

Hi everyone,

I extracted new annotated gene features from IGV as bed file with this format:

chr17    11049086    11051487    YourSeq    999.4911    -    11049086    11051487    .    2    1735,230,    0,2171,
chr17    11044924    11051487    YourSeq    995.2607    -    11044924    11051487    .    4    81,124,198,230,    0,2630,5699,6333,​

now I want to plot it with Gviz along with my RNA-seq data .. I tried to load it as bed file but the rtracklayer complained .. any help to get this done properly

thanks much

gviz igv • 224 views
ADD COMMENTlink modified 16 months ago • written 16 months ago by ta_awwad10

I figured it out .. jus have to convert this bed format to gff3 and that it.

ADD REPLYlink written 16 months ago by ta_awwad10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 432 users visited in the last hour