EnrichMap error even it doesn't exist in the last commit
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@alperkucukural-9803
Last seen 20 months ago
UMass Medical School Worcester MA

Hi, 

I have removed enrichMap function from debrowser but I still get the error below.

http://bioconductor.org/checkResults/devel/bioc-LATEST/debrowser/malbec1-install.html

Error : object ‘enrichMap’ is not exported by 'namespace:DOSE'
ERROR: lazy loading failed for package ‘debrowser’
* removing ‘/home/biocbuild/bbs-3.8-bioc/R/library/debrowser

So, it doesn't exist anywhere in the project. The last commit # 69b8702 is also right. But, how can it get this error? Is there anything I am missing?

Thanks,

Alper

 

build error • 1.7k views
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@martin-morgan-1513
Last seen 5 months ago
United States

This sounds like a package development question, and should be asked on the bioc-devel mailing list.

This commit

/DOSE master$ git show a51d3fc906b73f205ef0589f9aff5609347eec83 NAMESPACEcommit a51d3fc906b73f205ef0589f9aff5609347eec83
Author: guangchuang yu <guangchuangyu@gamil.com>
Date:   Wed Jun 20 11:18:50 2018 +0800

    update docs

diff --git a/NAMESPACE b/NAMESPACE
index c5f4a2f..bbe6375 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -25,7 +25,6 @@ export(doSim)
 export(enrichDGN)
 export(enrichDGNv)
 export(enrichDO)
-export(enrichMap)
 export(enrichNCG)
 export(facet_grid)
 export(gene2DO)

removes enrichMap from the exports of DOSE; whether that was intentional or not I do not know; presumably maintainer("DOSE") does.

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Reading your question again, the problem is that your NAMESPACE still references enrichMap

git/debrowser master$ grep -r enrichMap *
NAMESPACE:importFrom(DOSE,enrichMap)
git/debrowser master$ git log --oneline -n 2
9d0ef55 version change
33b41e7 Merge branch 'master' of git.bioconductor.org:packages/debrowser

 

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OK great! I'll fix it.

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