I have been running some code in R to make a data frame with my ENST IDs and corresponding gene symbols. I have used the following code before but I have been unable to generate this table recently. The problem is that getBM returns 0 observations. Any help would be appreciated. Perhaps known issues with getBM?
mart<- useDataset("hsapiens_gene_ensembl", useMart('ensembl')) genes<-Data1$Name G_list<-getBM(filters = "ensembl_gene_id", attributes = c("ensembl_gene_id", "external_gene_name", "description"), values = genes, mart = mart)
My code, which does not produce any errors, runs and returns an empty object 0 observations with 2 columns. Genes is a list of ENST IDs.