Showing : ensembl • reset
1
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2
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530
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News: Upcoming Ensembl API and data access changes - new blog post available
ensembl mart biomaRt ensembldb
written 12 weeks ago by ▴ 10
0
votes
1
reply
554
views
News: Ensembl 115 has been released!
ensembl ensembldb biomaRt
written 5 months ago by ▴ 10
0
votes
3
replies
1.2k
views
Many transcripts missing from tx2gene created from Ensembl GTF file
kallisto tximport ensembl
updated 8 months ago by • 0 • written 8 months ago by • 0
0
votes
3
replies
980
views
getBM from biomaRt inconsistencies found with .gtf files across multiple species
.gtf biomaRt Ensembl
updated 11 months ago by ★ 6.6k • written 11 months ago by ▴ 20
0
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0
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1.2k
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
16 months ago Ensembl_Jorge ▴ 10
10
votes
44
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12k
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 7 weeks ago by • 0 • written 7.3 years ago by ★ 4.1k
1
vote
0
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871
views
News: Ensembl 111 has been released
Ensembl biomaRt
2.1 years ago Benjamin ▴ 30
3
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2
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1.4k
views
biomaRtl returns multiple GO terms when filtering on a single GO term in ensembl database
ensembl biomaRt
2.3 years ago henrydionne ▴ 10
1
vote
2
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1.5k
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl R biomaRt
2.6 years ago Miguel • 0
0
votes
2
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3.3k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 2.9 years ago by ★ 2.1k • written 2.9 years ago by • 0
5
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3
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3.0k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt ensembldb ensembl
3.4 years ago • updated 3.1 years ago jamie.gearing ▴ 60
1
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2
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1.5k
views
News: Ensembl 108 has been released!
biomaRt ensembldb ensembl
written 3.4 years ago by ▴ 10
0
votes
0
replies
1.0k
views
biomaRt, Ensembl, retrieve "Phenotypes" information
Ensembl biomaRt
3.6 years ago Hector • 0
8
votes
5
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12k
views
biomaRt server error, and mirrors do not help
ensembl biomaRt R
updated 15 months ago by • 0 • written 3.8 years ago by ▴ 50
2
votes
0
replies
1.2k
views
News: News:Ensembl 106 has just been released!
ensembl biomaRt ensembldb
3.9 years ago Benjamin ▴ 30
2
votes
3
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3.2k
views
Ensembl non responsive
ensembl R
3.9 years ago ksci ▴ 20
2
votes
1
reply
1.8k
views
Can Rsubread output use Ensembl gene IDs
Ensembl Rsubread
updated 3.9 years ago by 53k • written 3.9 years ago by ▴ 20
9
votes
14
replies
11k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 19 months ago by 4.3k • written 4.1 years ago by ▴ 40
0
votes
3
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2.8k
views
biomaRT getBM() get stuck
biomaRt getbm ensembl
updated 4.1 years ago by ★ 6.6k • written 4.1 years ago by • 0
1
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0
replies
1.3k
views
News: Ensembl 105 has just been released!
ensembl biomaRt ensembldb
4.2 years ago mchakiachvili ▴ 20
15
votes
13
replies
4.9k
views
celldex ensembl gene annotation issue
SingleR celldex HumanPrimaryCellAtlasData ensembl
updated 4.3 years ago by ▴ 10 • written 4.3 years ago by ▴ 20
0
votes
6
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3.0k
views
Getting paralogus genes from biomart for mouse
biomart biomaRt Ensembl
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
0
votes
2
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2.0k
views
News: Ensembl 103 has been released
biomaRt ensembldb Ensembl ensemblVEP Biomart
5.0 years ago • updated 4.8 years ago mchakiachvili ▴ 20
1
vote
1
reply
2.0k
views
topGO question
Ensembl ensembldb
updated 5.2 years ago by 68k • written 5.2 years ago by • 0
0
votes
0
replies
1.2k
views
News: Ensembl 102 has been released
Ensembl biomaRt BioMar ensembldb
5.2 years ago mchakiachvili ▴ 20
5
votes
8
replies
19k
views
Ensembl site unresponsive
ensembl biomart
updated 4.9 years ago by • 0 • written 5.4 years ago by ▴ 50
2
votes
11
replies
8.3k
views
biomaRT connexion problem make failed my unit tests
biomaRt Peer's Certificate Ensembl
updated 5.1 years ago by ★ 6.6k • written 5.4 years ago by • 0
4
votes
17
replies
4.0k
views
annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by ▴ 10
0
votes
1
reply
1.4k
views
News: Ensembl 101 hase been released
Ensembl BioMart News
5.5 years ago mchakiachvili ▴ 20
1
vote
3
replies
3.7k
views
Convert mouse gene ids to hamster gene ids
biomart R ensembl
updated 3.0 years ago by ★ 4.0k • written 5.6 years ago by • 0
1
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0
replies
1.8k
views
News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl annotation ensembldb News
5.8 years ago Johannes Rainer ★ 2.1k
1
vote
0
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1.3k
views
News: Ensembl 100 has been released
biomart ensembl e100 mart news News
5.8 years ago Thomas Maurel ▴ 800
0
votes
4
replies
2.0k
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon tximport tximportdata ensembl
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
1
vote
2
replies
2.0k
views
getBM biomart ensembl Error report
biomaRt ensembl
updated 5.9 years ago by ★ 6.6k • written 5.9 years ago by ▴ 10
0
votes
1
reply
2.3k
views
ChIPSeeker with Ensembl IDs
chipseeker Ensembl EnsDb.Mmusculus.v79 ensembldb
5.9 years ago Assa Yeroslaviz ★ 1.5k
0
votes
2
replies
3.0k
views
Error in martCheck(mart, c("ensembl", "ENSEMBL_MART_ENSEMBL")) : No dataset selected, please select a dataset first.
biomart mart ensembl
updated 5.9 years ago by 68k • written 5.9 years ago by • 0
0
votes
0
replies
1.0k
views
News: Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt Ensembl News
6.0 years ago Astrid_Ensembl • 0
4
votes
4
replies
3.4k
views
biomaRt getSequence fails with genomic coordinates
biomart getSequence genomic coordinates ENSEMBL bug report
updated 6.1 years ago by ★ 6.6k • written 6.1 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Question regarding retrieving miRNA sequences from ENSEMBLE
ensembl
updated 6.1 years ago by 43k • written 6.1 years ago by • 0
0
votes
0
replies
1.3k
views
News: Ensembl 99 has been released and renaming of species
biomart ensembl e99 mart news News
6.1 years ago Thomas Maurel ▴ 800
4
votes
11
replies
4.1k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 6.2 years ago by ★ 3.4k • written 6.2 years ago by ▴ 10
1
vote
3
replies
3.2k
views
AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub Ensembl Mouse AnnotationHub Ensembl
6.2 years ago dmgatti ▴ 10
0
votes
14
replies
3.0k
views
Error while opening Mart with biomaRt package
software error ensembl biomart
6.2 years ago loicborcard01 • 0
0
votes
6
replies
1.6k
views
Anyone else having trouble with biomaRt (Oct 10, 2019)
ensembl biomaRt
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by ★ 1.4k
0
votes
7
replies
4.4k
views
BioMart does not find mouse homologs of human genes
biomart homolog ortholog gene conversion ensembl
updated 6.4 years ago by 68k • written 6.4 years ago by ▴ 30
0
votes
0
replies
1.5k
views
News: Ensembl 98 has been released and renaming of species
biomart ensembl e98 mart News
6.4 years ago Thomas Maurel ▴ 800
0
votes
1
reply
1.1k
views
Eliminate redundancy in biomaRt (2.38.0) query
biomaRt Ensembl
updated 6.6 years ago by ★ 6.6k • written 6.6 years ago by • 0
0
votes
3
replies
2.4k
views
external_gene_id attribute removed from new biomaRt version
biomaRt Ensembl Ensemblplants
6.6 years ago Didi ▴ 10
1
vote
0
replies
1.4k
views
News: ensembldb EnsDb databases for Ensembl release 97 added to AnnotationHub
annotation ensembldb Ensembl News
6.6 years ago Johannes Rainer ★ 2.1k
1
vote
0
replies
1.2k
views
News: Ensembl 97 has been released
biomart ensembl e97 News
6.7 years ago James Allen ▴ 10
142 results • Page 1 of 3
Recent ...
Replies
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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