pathfindR package and find a problem related to
Error in pathview::pathview(gene.data = genedata, gene.idtype = "SYMBOL", : object 'bods' not found In addition: Warning messages: 1: In runpathfindR(RAinput, outputdir = "testdir") : There already is a directoy named "testdir". Changing to "testdir(1)" not to overwrite the previous results. 2: In inputprocessing(input, pvalthreshold, pin_path) : The gene column was turned into character from factor. 3: In data(bods) : data set ‘bods’ not found
I followed the suggestion by Author of package
pathfindR and still cannot fix problem. I think the developer of
pathview should fix source code of
data() part in all functions.