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sbbinfo90
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0
@sbbinfo90-17078
Last seen 6.3 years ago
Hello,
I am using VIDGER from bioconductor but it shows an error:
vsMAMatrix(data = cuffdiffdata, d.factor = NULL, type='cuffdiff',padj = 0.05, y.lim = NULL, lfc = NULL, title = TRUE, legend = TRUE,grid = TRUE, counts = TRUError in `$<-.data.frame`(`*tmp*`, "id_x", value = "24hpi") :
replacement has 1 row, data has 0
Please reply with appropriate solution.
Thanks!
It would be also helpful for the pathview maintainers if you included your
sessionInfo()so they are aware what os system, version of R, and version of the package you are using.Sure,
> sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS: /home/sbharti/Softwares/R_351/lib64/R/lib/libRblas.so
LAPACK: /home/sbharti/Softwares/R_351/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=C LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] vidger_1.1.4
loaded via a namespace (and not attached):
[1] Biobase_2.41.2 tidyr_0.8.1
[3] edgeR_3.23.3 bit64_0.9-7
[5] splines_3.5.1 Formula_1.2-3
[7] assertthat_0.2.0 stats4_3.5.1
[9] latticeExtra_0.6-28 blob_1.1.1
[11] GenomeInfoDbData_1.1.0 ggrepel_0.8.0
[13] pillar_1.3.0 RSQLite_2.1.1
[15] backports_1.1.2 lattice_0.20-35
[17] limma_3.37.4 glue_1.3.0
[19] digest_0.6.17 GenomicRanges_1.33.13
[21] RColorBrewer_1.1-2 XVector_0.21.3
[23] checkmate_1.8.5 colorspace_1.3-2
[25] htmltools_0.3.6 Matrix_1.2-14
[27] plyr_1.8.4 DESeq2_1.21.21
[29] XML_3.98-1.16 pkgconfig_2.0.2
[31] genefilter_1.63.2 zlibbioc_1.27.0
[33] purrr_0.2.5 xtable_1.8-3
[35] scales_1.0.0 BiocParallel_1.15.12
[37] htmlTable_1.12 tibble_1.4.2
[39] annotate_1.59.1 IRanges_2.15.17
[41] ggplot2_3.0.0 SummarizedExperiment_1.11.6
[43] nnet_7.3-12 BiocGenerics_0.27.1
[45] lazyeval_0.2.1 survival_2.42-6
[47] magrittr_1.5 crayon_1.3.4
[49] evaluate_0.11 memoise_1.1.0
[51] GGally_1.4.0 foreign_0.8-71
[53] tools_3.5.1 data.table_1.11.4
[55] matrixStats_0.54.0 stringr_1.3.1
[57] S4Vectors_0.19.19 locfit_1.5-9.1
[59] munsell_0.5.0 cluster_2.0.7-1
[61] DelayedArray_0.7.41 AnnotationDbi_1.43.1
[63] bindrcpp_0.2.2 compiler_3.5.1
[65] GenomeInfoDb_1.17.1 rlang_0.2.2
[67] grid_3.5.1 RCurl_1.95-4.11
[69] rstudioapi_0.7 htmlwidgets_1.2
[71] rmarkdown_1.10 bitops_1.0-6
[73] base64enc_0.1-3 gtable_0.2.0
[75] reshape_0.8.7 DBI_1.0.0
[77] R6_2.2.2 gridExtra_2.3
[79] knitr_1.20 dplyr_0.7.6
[81] bit_1.1-14 rprojroot_1.3-2
[83] bindr_0.1.1 Hmisc_4.1-1
[85] stringi_1.2.4 parallel_3.5.1
[87] Rcpp_0.12.18 geneplotter_1.59.0
[89] rpart_4.1-13 acepack_1.4.1
[91] tidyselect_0.2.4