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Wojeff
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@wojeff-14309
Last seen 5.3 years ago
Hi there, I wanted to extract the TSS up-stream region of each gene up to the end position (TTS) of the nearby gene. I only known the promoter function, but it seems can not deal with this problem. I could only get the GenomicRange object of all genes from the gtf file by the following codes:
txDB <- makeTxDbFromGFF("test.gtf")
genes <-genes(txDB)
How to obtain my desired region for each gene?
