Showing : genomicranges • reset
2
votes
3
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540
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Guitar R package requires update due to dependency GenomicFeatures
GenomicFeatures Guitar txdbmaker GenomicRanges
written 5 weeks ago by ▴ 10
0
votes
1
reply
343
views
Job: Bioinformatician at the Lausanne University Hospital
GenomicRanges JobPosting
written 10 weeks ago by ▴ 20
0
votes
1
reply
367
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Finding duplicated entries in GRangesList
GenomicRanges
updated 11 weeks ago by ★ 4.0k • written 5 months ago by • 0
1
vote
4
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2.2k
views
How to left_join a tidySummarizedExperiment with a GRanges object by seqnames and start (tidyverse-style)?
GenomicRanges tidySummarizedExperiment tidyomics
9 months ago • updated 4 months ago Kateřina • 0
4
votes
2
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1.5k
views
GAlignments Cigar to GRanges
GenomicRanges cigarRangesAlongReferenceSpace GenomicAlignments Cigar
8 months ago pineiroalejandro ▴ 10
0
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0
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523
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Significant Probes and Genes differ in Probe and Region level Differential Methylation Analyses
limma probe DMRcate GenomicRanges DifferentialMethylation
9 months ago jamiecatalano2 • 0
1
vote
4
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1.2k
views
fast apply on RleList
GenomicRanges RleList
10 months ago story.benjamin ▴ 20
2
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1
reply
1.1k
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Having Trouble Using CNE12() and CNE21() in CNEr
GenomicRanges CNEr
10 months ago 1324087964 • 0
0
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1
reply
1.3k
views
Using genomicRanges / plyranges to calculate score of peaks within intervals
plyranges GenomicRanges
updated 12 months ago by 43k • written 4.8 years ago by • 0
1
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1
reply
2.1k
views
Reducing and aggregating GRanges with gaps using plyranges
GenomicRanges plyranges
updated 12 months ago by 43k • written 5.3 years ago by • 0
0
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0
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478
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News: RNAseq data analysis with R/Bioconductor (4-15 November)
DESeq2 GenomicRanges
15 months ago info ▴ 10
3
votes
3
replies
900
views
ISO a solution to rank-order introns by transcript
GenomicRanges GenomicFeatures
16 months ago • updated 13 months ago mat149 ▴ 80
0
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0
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624
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hichip fragments extraction chip seq
ChIPSeqData interact GenomicRanges HiC
18 months ago user_bioinfo • 0
2
votes
1
reply
695
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Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 21 months ago by 43k • written 21 months ago by ▴ 80
0
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0
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838
views
Using Granges to find overlapping pairs at exactly 10kb distance
genomeIntervals GenomicRanges
22 months ago gshweta95 • 0
0
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0
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713
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ISO statistical test for obs-exp A,T,C,G counts by genomic range/position
GenomicRanges
24 months ago mat149 ▴ 80
2
votes
1
reply
967
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Need Help w/ Subset on GRangesList
GenomicRange GenomicRanges
2.0 years ago mat149 ▴ 80
0
votes
2
replies
1.5k
views
GenomicRanges coult not be loaded after R upgrade
DESeq2 Bioconductor GenomicRanges
updated 2.8 years ago by • 0 • written 2.8 years ago by • 0
3
votes
4
replies
2.0k
views
Error with importFrom and GenomicRanges in NAMESPACE
GenomicRanges IRanges
updated 2.9 years ago by 16k • written 2.9 years ago by • 0
0
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1
reply
1.2k
views
Error printing a CompressedGRangesList
GenomicRanges
3.1 years ago • updated 3.0 years ago Lluís Revilla Sancho ▴ 760
0
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0
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1.2k
views
Error importing UCSC phastCons annotation in BigWig format
GenomicRanges rtracklayer
3.0 years ago Delta._.43 ▴ 20
4
votes
4
replies
2.7k
views
Flank GenomicRanges on Both Sides
GenomicRanges
updated 3.1 years ago by 68k • written 3.1 years ago by ★ 1.6k
3
votes
1
reply
1.3k
views
Find ranges that are shared by 80% or more of 10 GRanges objects
Granges GenomicRanges
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
0
votes
2
replies
2.2k
views
GenomicRanges method to make the total width of ranges a certain value?
GenomicRanges
updated 3.2 years ago by ★ 1.6k • written 3.3 years ago by • 0
2
votes
2
replies
3.5k
views
getSeq failing with DNAStringSet and GRanges
ORFik Bioconductor GenomicRanges Biostrings BSgenome
3.4 years ago • updated 3.3 years ago Mog • 0
0
votes
0
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974
views
nearest and nearestKNeighbors with k=1 produce different results
GenomicRanges
3.6 years ago Simon Coetzee ▴ 50
2
votes
3
replies
3.3k
views
Combine GRanges(List) to a single GRanges with unified breakpoints
GenomicRanges plyranges
3.6 years ago Rodrigo • 0
0
votes
1
reply
1.8k
views
Can´t install GenomicRanges and rtracklayer
rtracklayer GenomicRanges Installation
updated 3.6 years ago by 68k • written 3.6 years ago by • 0
3
votes
2
replies
2.3k
views
toGRanges help!
GenomicRanges toGRanges Bioconductor
3.7 years ago samantha.haque • 0
1
vote
2
replies
2.5k
views
Extracting Score/Coverage From GRange Object
IRanges rtracklayer GenomicRanges
3.8 years ago vanbelj ▴ 30
0
votes
1
reply
1.8k
views
finding overlap using GenomicRanges with two data sets specifying minoverlap Function
Biostrings GenomicRanges
updated 3.8 years ago by ▴ 780 • written 3.8 years ago by • 0
1
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0
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1.3k
views
How about a getSeq() method for GRanges ?
GenomicRanges BSGenome
3.8 years ago Charles Plessy ▴ 180
0
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2
replies
6.4k
views
Gene body coverage plot
plot gene GenomicRanges Coverage R
updated 3.9 years ago by ▴ 20 • written 3.9 years ago by • 0
0
votes
6
replies
2.7k
views
Error: duplicate row.names
GenomicRanges methylKit S4Vectors
updated 3.9 years ago by 68k • written 3.9 years ago by • 0
0
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0
replies
1.3k
views
Annotating copy number alterations per sample using CNVRanger R package and return of duplicated gene symbols
CopyNumberVariation CNVRanger GenomicRanges
4.0 years ago svlachavas ▴ 840
6
votes
2
replies
2.0k
views
strand-aware GRanges shift
GenomicRanges
updated 4.0 years ago by ★ 1.6k • written 4.0 years ago by ▴ 10
9
votes
9
replies
5.4k
views
Subset GRanges by intersection
findOverlaps GPos GenomicRanges subsetByOverlaps
updated 4.1 years ago by 68k • written 4.1 years ago by ▴ 10
3
votes
5
replies
3.0k
views
Splitting a TxDB or GRanges by Chromosome
GenomicRanges split chromosome TxDb
updated 4.2 years ago by 16k • written 4.2 years ago by ▴ 40
4
votes
1
reply
1.2k
views
`promoters()` fails on `GPos` objects
GenomicRanges
updated 4.2 years ago by 16k • written 4.2 years ago by ▴ 180
1
vote
3
replies
8.5k
views
Understanding findoverlaps function in GenomicRanges
GenomicRanges genomicra
updated 4.3 years ago by 68k • written 4.3 years ago by ▴ 10
2
votes
4
replies
4.9k
views
How to simply change chromosome names of a GRanges object?
genomicrang GenomicRanges
updated 4.1 years ago by 16k • written 4.3 years ago by ▴ 20
0
votes
2
replies
1.9k
views
Handling missing seqlenghts
GenomicRanges
4.3 years ago Charles Plessy ▴ 180
4
votes
2
replies
1.8k
views
GenomicRanges::union fails on R devel
devel GenomicRanges
4.4 years ago Guillaume Devailly ▴ 60
5
votes
2
replies
1.8k
views
How to build a GRangesList where each GRanges element is a CDS coordinate of gene transcripts?
GenomicRanges sesame sesameData GenomicFeatures
4.4 years ago Pratik Mehta ▴ 10
2
votes
2
replies
2.0k
views
How to subset GRangesList by seqnames
GenomicRanges
updated 4.4 years ago by 68k • written 4.4 years ago by ▴ 10
3
votes
2
replies
2.2k
views
`GenomicRanges` cheat sheet
GenomicRanges
4.4 years ago chirag.parsania ▴ 10
0
votes
2
replies
1.6k
views
Failed to get promoters using promoters() in R 4.0.3.
promoter GenomicRanges rtracklayer GRanges
4.4 years ago Arslan • 0
0
votes
2
replies
1.6k
views
GRanges::distanceToNearest does not return distance to nearest
GenomicRanges Genomic
4.5 years ago Daniel Cameron ▴ 40
2
votes
4
replies
2.0k
views
Unique GPos taking into account mcols
GenomicRanges unique GPos
4.5 years ago • updated 4.4 years ago maltethodberg ▴ 180
0
votes
1
reply
1.1k
views
How to overlap granges objects by gene name
GenomicRanges
updated 4.6 years ago by 68k • written 4.6 years ago by • 0
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