Biostar Promoter

Showing : promoter • reset

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535

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promoter GenomicRanges rtracklayer GRanges

17 months ago Arslan • 0

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645

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promoter

updated 2.7 years ago by Hervé Pagès 16k • written 2.7 years ago by Charles Plessy ▴ 170

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757

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r granges promoter

updated 3.9 years ago by Hervé Pagès 16k • written 3.9 years ago by eggrandio • 0

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533

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TSS promoter cage cager

4.2 years ago bharata1803 ▴ 40

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990

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genomicranges genomicfeatures promoter upstream_flank

4.4 years ago Wojeff • 0

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1.2k

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repitools promoter tss annotation

4.9 years ago Ryan C. Thompson 7.8k

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1.2k

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TxDB genomicfeatures promoter getpromoterseq

updated 4.9 years ago by Hervé Pagès 16k • written 4.9 years ago by rbenel ▴ 20

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817

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dexseq promoter utr

updated 6.6 years ago by Alejandro Reyes ★ 1.8k • written 6.6 years ago by joan.hooper • 0

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1.3k

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bsgenome txdb promoter

updated 7.0 years ago by Martin Morgan 25k • written 7.0 years ago by sekawaiwai2006 ▴ 20

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1.8k

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promoter granges refseq ucsc organismdb

updated 7.2 years ago by Robert Castelo ★ 3.0k • written 7.2 years ago by efoss ▴ 10

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1.1k

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VariantAnnotation promoter drosophila melanogaster

updated 8.1 years ago by Valerie Obenchain ★ 6.7k • written 8.1 years ago by lidia.mateo ▴ 30

11 results • Page 1 of 1

Recent ...

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Comment: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k

Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?

Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0

Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…

Comment: Combat and dds Object by shaimaa • 0

I used the combat-seq but the deseq complain as its not integer what should i do

Answer: Different summary() and results() values in DeSeq2 by Basti ▴ 540

summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…

Votes

Answer: mas5calls function doesn't work; mirna40cdf problem

Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem

Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data

A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings

Awards • All

Popular Question to Guido Hooiveld ★ 3.5k

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k