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promoter
•
reset
0
votes
2
replies
1.6k
views
Failed to get promoters using promoters() in R 4.0.3.
promoter
GenomicRanges
rtracklayer
GRanges
4.4 years ago
Arslan
• 0
3
votes
6
replies
2.0k
views
Better way to find head to head GRanges?
promoter
updated 5.7 years ago by
Hervé Pagès
16k • written 5.7 years ago by
Charles Plessy
▴ 180
1
vote
3
replies
1.9k
views
Obtain coordinates of 5' upstream region up to closest coding region
r
granges
promoter
updated 6.9 years ago by
Hervé Pagès
16k • written 6.9 years ago by
eggrandio
• 0
0
votes
0
replies
1.5k
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
7.2 years ago
bharata1803
▴ 60
0
votes
0
replies
1.9k
views
GenomicFeatures: How to extract a gene's upstream region of TSS up to the end position of the flanking (nearby) gene.
genomicranges
genomicfeatures
promoter
upstream_flank
7.4 years ago
Wojeff
• 0
0
votes
3
replies
2.9k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
7.9 years ago
Ryan C. Thompson
★ 7.9k
1
vote
5
replies
2.7k
views
Extract genomic features from a TxDb-like object
TxDB
genomicfeatures
promoter
getpromoterseq
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
rbenel
▴ 50
1
vote
2
replies
1.7k
views
DEXseq for alternate promoter usage
dexseq
promoter
utr
updated 9.7 years ago by
Alejandro Reyes
★ 1.9k • written 9.7 years ago by
joan.hooper
• 0
1
vote
6
replies
2.7k
views
problem creating txdb object and bsgenome for solanum pennellii
bsgenome
txdb
promoter
updated 10.0 years ago by
Martin Morgan
25k • written 10.0 years ago by
sekawaiwai2006
▴ 20
2
votes
2
replies
3.8k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 10.2 years ago by
Robert Castelo
★ 3.4k • written 10.2 years ago by
efoss
▴ 10
2
votes
2
replies
2.0k
views
promoter definition in VariantAnnotation
VariantAnnotation
promoter
drosophila melanogaster
updated 11.1 years ago by
Valerie Obenchain
★ 6.8k • written 11.1 years ago by
lidia.mateo
▴ 30
11 results • Page
1 of 1
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Comment: soGGi error
by
a2sahaaaq2c
• 0
Technical discrepancies in software can be frustrating, but finding the right tools for your digital activities is key to a smooth experien…
Comment: GOseq Probability Weight Function bad fit
by
a2sahaaaq2c
• 0
the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics
by
mudasarnaeem2020
• 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error
by
a2sahaaaq2c
• 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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Guido Hooiveld
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shepherl
4.3k
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to
Steve Lianoglou
★ 13k
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to
Michael Love
43k
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