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promoter
•
reset
0
votes
2
replies
1.7k
views
Failed to get promoters using promoters() in R 4.0.3.
promoter
GenomicRanges
rtracklayer
GRanges
4.5 years ago
Arslan
• 0
3
votes
6
replies
2.0k
views
Better way to find head to head GRanges?
promoter
updated 5.8 years ago by
Hervé Pagès
16k • written 5.8 years ago by
Charles Plessy
▴ 180
1
vote
3
replies
2.0k
views
Obtain coordinates of 5' upstream region up to closest coding region
r
granges
promoter
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
eggrandio
• 0
0
votes
0
replies
1.5k
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
7.3 years ago
bharata1803
▴ 60
0
votes
0
replies
1.9k
views
GenomicFeatures: How to extract a gene's upstream region of TSS up to the end position of the flanking (nearby) gene.
genomicranges
genomicfeatures
promoter
upstream_flank
7.4 years ago
Wojeff
• 0
0
votes
3
replies
3.0k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
8.0 years ago
Ryan C. Thompson
★ 7.9k
1
vote
5
replies
2.7k
views
Extract genomic features from a TxDb-like object
TxDB
genomicfeatures
promoter
getpromoterseq
updated 8.0 years ago by
Hervé Pagès
16k • written 8.0 years ago by
rbenel
▴ 50
1
vote
2
replies
1.7k
views
DEXseq for alternate promoter usage
dexseq
promoter
utr
updated 9.7 years ago by
Alejandro Reyes
★ 1.9k • written 9.7 years ago by
joan.hooper
• 0
1
vote
6
replies
2.7k
views
problem creating txdb object and bsgenome for solanum pennellii
bsgenome
txdb
promoter
updated 10.1 years ago by
Martin Morgan
25k • written 10.1 years ago by
sekawaiwai2006
▴ 20
2
votes
2
replies
3.8k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 10.3 years ago by
Robert Castelo
★ 3.4k • written 10.3 years ago by
efoss
▴ 10
2
votes
2
replies
2.0k
views
promoter definition in VariantAnnotation
VariantAnnotation
promoter
drosophila melanogaster
updated 11.1 years ago by
Valerie Obenchain
★ 6.8k • written 11.1 years ago by
lidia.mateo
▴ 30
11 results • Page
1 of 1
Recent ...
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Answer: Inconsistencies between accessor functions for TxDb databases with selected seql
by
a2a2hd42aa
• 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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Gordon Smyth
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Dario Strbenac
★ 1.6k
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chirag.parsania
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