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promoter
•
reset
0
votes
2
replies
1.2k
views
Failed to get promoters using promoters() in R 4.0.3.
promoter
GenomicRanges
rtracklayer
GRanges
2.9 years ago
Arslan
• 0
3
votes
6
replies
1.3k
views
Better way to find head to head GRanges?
promoter
updated 4.2 years ago by
Hervé Pagès
16k • written 4.2 years ago by
Charles Plessy
▴ 180
1
vote
3
replies
1.3k
views
Obtain coordinates of 5' upstream region up to closest coding region
r
granges
promoter
updated 5.4 years ago by
Hervé Pagès
16k • written 5.4 years ago by
eggrandio
• 0
0
votes
0
replies
966
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
5.7 years ago
bharata1803
▴ 60
0
votes
0
replies
1.4k
views
GenomicFeatures: How to extract a gene's upstream region of TSS up to the end position of the flanking (nearby) gene.
genomicranges
genomicfeatures
promoter
upstream_flank
5.8 years ago
Wojeff
• 0
0
votes
3
replies
2.0k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.4 years ago
Ryan C. Thompson
★ 7.9k
1
vote
5
replies
2.0k
views
Extract genomic features from a TxDb-like object
TxDB
genomicfeatures
promoter
getpromoterseq
updated 6.4 years ago by
Hervé Pagès
16k • written 6.4 years ago by
rbenel
▴ 40
1
vote
2
replies
1.2k
views
DEXseq for alternate promoter usage
dexseq
promoter
utr
updated 8.1 years ago by
Alejandro Reyes
★ 1.9k • written 8.1 years ago by
joan.hooper
• 0
1
vote
6
replies
2.0k
views
problem creating txdb object and bsgenome for solanum pennellii
bsgenome
txdb
promoter
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
sekawaiwai2006
▴ 20
2
votes
2
replies
2.8k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 8.7 years ago by
Robert Castelo
★ 3.3k • written 8.7 years ago by
efoss
▴ 10
2
votes
2
replies
1.4k
views
promoter definition in VariantAnnotation
VariantAnnotation
promoter
drosophila melanogaster
updated 9.5 years ago by
Valerie Obenchain
★ 6.8k • written 9.5 years ago by
lidia.mateo
▴ 30
11 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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to
Lluís Revilla Sancho
▴ 730
Popular Question
to
maltethodberg
▴ 180
Scholar
to
Michael Love
42k
Popular Question
to
Leonardo Collado Torres
★ 1.1k
Scholar
to
Gordon Smyth
51k
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