Biostar Promoter

Showing : promoter • reset

votes

replies

313

views

promoter

updated 14 months ago by Hervé Pagès 15k • written 14 months ago by Charles Plessy ▴ 130

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389

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r granges promoter

updated 2.4 years ago by Hervé Pagès 15k • written 2.4 years ago by eggrandio • 0

votes

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270

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TSS promoter cage cager

2.7 years ago bharata1803 ▴ 40

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485

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genomicranges genomicfeatures promoter upstream_flank

2.8 years ago Wojeff • 0

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869

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repitools promoter tss annotation

3.4 years ago Ryan C. Thompson 7.6k

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775

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TxDB genomicfeatures promoter getpromoterseq

updated 3.4 years ago by Hervé Pagès 15k • written 3.4 years ago by rbenel ▴ 20

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552

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dexseq promoter utr

updated 5.1 years ago by Alejandro Reyes ★ 1.8k • written 5.1 years ago by joan.hooper • 0

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1.0k

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bsgenome txdb promoter

updated 5.5 years ago by Martin Morgan 25k • written 5.5 years ago by sekawaiwai2006 ▴ 20

votes

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1.2k

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promoter granges refseq ucsc organismdb

updated 5.7 years ago by Robert Castelo ★ 2.7k • written 5.7 years ago by efoss ▴ 10

votes

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906

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VariantAnnotation promoter drosophila melanogaster

updated 6.6 years ago by Valerie Obenchain ★ 6.7k • written 6.6 years ago by lidia.mateo ▴ 30

10 results • Page 1 of 1

Recent ...

Replies

Answer: Compilation fatal error: iostream.h: No such file or directory when installing R by Kevin Blighe 3.2k

It is likely that you need to install the libraries on your Ubuntu OS outside R, via: apt-get install libhdf5-dev Note: use `sudo` if…

Comment: Combining HTSeq and RNA-SeQ for differential analysis by szomolay • 0

The disease data is from TCGA and the normal data is from GTEx. I am trying to do DE analysis and I am aware of the Xena portal where log2(…

Comment: Problems with installation of 'phyloseq by Kevin Blighe 3.2k

What messages do you receive when you try to install the *GenomeInfoDbData* package?

Answer: derfinder model.matrix with limma or single base-level F-statistics analysis by Leonardo Collado Torres ▴ 890

Hi, Can you provide an example that breaks? The following R code works for me: ```R library("derfinder") set.seed(20210801) pheno …

Comment: Combining HTSeq and RNA-SeQ for differential analysis by ATpoint ▴ 710

The fact that you don't have raw data indicate that disease and healthy conditions come from different datasets or studies, hence there is …

Votes

A: DESeq2: multiple conditions design -- How to select subset comparisons from the

Comment: Idea: Using DESeq2 to test a change in ratio of two genes

A: Normalized counts of DESeq2 affected by design formula?

A: Finding orthologous human/mouse ENSEMBL IDs

Comment: What are these genes ? [How to get Ensembl IDs for them]

Awards • All

Scholar to Leonardo Collado Torres ▴ 890