Hi, I hope any expert user can help me with this question to get MINFI started on my WINDOW 10 desktop
The problem :
I tried to install MINFI in R Studio in Window 10, during the installation process using the following standard codes
source("https://bioconductor.org/biocLite.R")
biocLite("minfi")
It shows an error message during the installation process as follows:
* installing *source* package 'GenomicFeatures' ...
** R
** inst
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for 'GenomeInfoDb' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called 'GenomeInfoDbData'
Error : package 'GenomeInfoDb' could not be loaded
ERROR: lazy loading failed for package 'GenomicFeatures'
* removing 'C:/Users/zcluo/Documents/R/R-3.5.1/library/GenomicFeatures'
In R CMD INSTALL
* installing *source* package 'GenomeInfoDbData' ...
==end =
Therefore, the installation has some problem, when I try to start MINFI use the codes:
library(minfi)
Then. I got the following error message:
Error: package or namespace load failed for ‘bumphunter’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘GenomicFeatures’
Error: package ‘bumphunter’ could not be loaded
Then, I tried to fix the "bumphunter' problem, using the following re-installation codes:
remove.packages("bumphunter")
source("https://bioconductor.org/biocLite.R")
biocLite("bumphunter")
library(bumphunter)
Unfortunately, it does not work. During the installation, it asked for permission to renew all or part of the installation, I answered "a" for all.
So tried to install the MINFI a second time in another day, and the problems pop out repeatedly with the same error messages.
Warning message:
In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘GenomicFeatures’ had non-zero exit status