Hi everyone,
I am trying to install Metab package (of Bioconductor) in R.3.5.1, but I am getting this error:
Attaching package: ‘xcms’
The following object is masked from ‘package:stats’:
sigma
Loading required package: svDialogs
Warning message:
In fun(libname, pkgname) :
mzR has been built against a different Rcpp version (0.12.19)
than is installed on your system (1.0.0). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
Output of sessionInfo():
> sessionInfo(package = NULL)
R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)
Matrix products: default
locale:
[1] LC_COLLATE=Spanish_Spain.1252 LC_CTYPE=Spanish_Spain.1252
[3] LC_MONETARY=Spanish_Spain.1252 LC_NUMERIC=C
[5] LC_TIME=Spanish_Spain.1252
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets methods
[9] base
other attached packages:
[1] Metab_1.16.0 svDialogs_1.0.0 xcms_3.4.0 MSnbase_2.8.0
[5] ProtGenerics_1.14.0 S4Vectors_0.20.1 mzR_2.16.0 BiocParallel_1.16.0
[9] Biobase_2.42.0 BiocGenerics_0.28.0 Rcpp_1.0.0
loaded via a namespace (and not attached):
[1] RColorBrewer_1.1-2 DEoptimR_1.0-8 pillar_1.3.0
[4] compiler_3.5.1 BiocManager_1.30.3 plyr_1.8.4
[7] iterators_1.0.10 tools_3.5.1 zlibbioc_1.28.0
[10] digest_0.6.18 ncdf4_1.16 MALDIquant_1.18
[13] tibble_1.4.2 preprocessCore_1.44.0 gtable_0.2.0
[16] lattice_0.20-38 rlang_0.3.0.1 foreach_1.4.4
[19] Matrix_1.2-15 svGUI_1.0.0 rstudioapi_0.8
[22] IRanges_2.16.0 multtest_2.38.0 grid_3.5.1
[25] robustbase_0.93-3 impute_1.56.0 survival_2.43-1
[28] XML_3.98-1.16 RANN_2.6 limma_3.38.2
[31] pander_0.6.3 ggplot2_3.1.0 splines_3.5.1
[34] scales_1.0.0 pcaMethods_1.74.0 codetools_0.2-15
[37] MASS_7.3-51.1 MassSpecWavelet_1.48.0 mzID_1.20.0
[40] colorspace_1.3-2 affy_1.60.0 doParallel_1.0.14
[43] lazyeval_0.2.1 munsell_0.5.0 vsn_3.50.0
[46] crayon_1.3.4 affyio_1.52.0
Many thanks in advance,
Marta