Comparing more than 2 experimental groups with MEDIPS?
1
0
Entering edit mode
mtefit • 0
@mtefit-18571
Last seen 6.0 years ago

I am using MEDIPS to analyze MEDIP-seq data but I need to compare multiple conditions. Is it possible to use this package to detect differential coverage between more than 2 experimental conditions?

 

medips medip-seq dna methylation dmr analysis • 1.1k views
ADD COMMENT
1
Entering edit mode
Lukas Chavez ▴ 570
@lukas-chavez-5781
Last seen 6.7 years ago
USA/La Jolla/UCSD
Dear mtefit, MEDIPS does not allow to analyze multiple (>2) conditions. Please consider our R/BioC package qsea, which also has MeDIP-seq specific functionalities but also allows the use of a design matrix. Sincerely, Lukas _____________________________________ Lukas Chavez, Ph.D. Assistant Professor, Department of Medicine University of California, San Diego (UCSD) Biomedical Research Facility 2 | Room 2A24 9500 Gilman Drive | MC 0765 | La Jolla, CA 92093 T: 858 246 1919 | Email: lukaschavez@ucsd.edu<mailto:lukaschavez@ucsd.edu> www.oncoepigenomics.org<http: www.oncoepigenomics.org=""> On Nov 28, 2018, at 3:47 PM, mtefit [bioc] <noreply@bioconductor.org<mailto:noreply@bioconductor.org>> wrote: Activity on a post you are following on support.bioconductor.org<https: support.bioconductor.org=""/> User mtefit<https: support.bioconductor.org="" u="" 18571=""/> wrote Question: Comparing more than 2 experimental groups with MEDIPS?<https: support.bioconductor.org="" p="" 115611=""/>: I am using MEDIPS to analyze MEDIP-seq data but I need to compare multiple conditions. Is it possible to use this package to detect differential coverage between more than 2 experimental conditions? ________________________________ Post tags: medips, medip-seq, dna methylation, dmr analysis You may reply via email or visit Comparing more than 2 experimental groups with MEDIPS?
ADD COMMENT
0
Entering edit mode

Thanks for your quick answer and recommandation!

Best,
Mélisandre Téfit

 

ADD REPLY

Login before adding your answer.

Traffic: 866 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6