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dna methylation
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0
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589
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Estimate cell proportion from beta values using minfi estimateCellCounts?
minfi
cell proportion
estimateCellCounts
DNA Methylation
3.2 years ago
grayapply2009
• 0
0
votes
2
replies
1.1k
views
WGCNA on methylation data
normalization
DNA methylation
WGCNA
updated 3.9 years ago by
Peter Langfelder
★ 2.8k • written 4.0 years ago by
enora.fremy
• 0
1
vote
2
replies
687
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 4.5 years ago by
Lukas Chavez
▴ 570 • written 4.5 years ago by
mtefit
• 0
7
votes
7
replies
1.2k
views
Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R
gdc
rna-seq
dna methylation
updated 4.6 years ago by
Sean Davis
21k • written 4.6 years ago by
RichardJActon
▴ 50
1
vote
2
replies
837
views
Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
4.8 years ago
peter.fransquet
• 0
0
votes
0
replies
566
views
iEVORA wrapping up error
differential variability
dna methylation
iEVORA
DVP
5.1 years ago
poojitha.stemcell
▴ 10
0
votes
0
replies
778
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
5.3 years ago
gabrielrfries
• 0
0
votes
1
reply
807
views
Problem in working with BiSeq - BSraw
dna methylation
biseq
updated 5.4 years ago by
Gordon Smyth
47k • written 5.4 years ago by
ahmad.moousavi
• 0
2
votes
5
replies
1.3k
views
Error when prepare the TCGAdata
tcgabiolinks
dna methylation
updated 5.5 years ago by
Marcel Ramos
660 • written 5.5 years ago by
michaelwxf2012
• 0
1
vote
1
reply
1.0k
views
Beta Value Analysis - DNA Methylation Dataset
dna methylation
illimina 450k methylation
beta
M
significance
updated 5.7 years ago by
James W. MacDonald
62k • written 5.7 years ago by
skids121
• 0
0
votes
0
replies
973
views
DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
CNV
minfi
preprocessing
dna methylation
6.2 years ago
Thomas
• 0
1
vote
2
replies
776
views
Correlating DNA methylation and Illumina gene expression microarray data
microarray
HM450
dna methylation
cohcap
updated 6.4 years ago by
James W. MacDonald
62k • written 6.4 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
887
views
error when using bumphunter package with illumina 450k data
minfi
bumphunter
DNA methylation
illumina450k
updated 7.0 years ago by
James W. MacDonald
62k • written 7.0 years ago by
fleur_p90
• 0
13 results • Page
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Recent ...
Replies
Comment: BiocGenerics binary is outdated for macOS ARM
by
Michael Steinbaugh
▴ 90
Awesome thanks, for reference here's the lock issue: ``` ############################################################################## ##…
Answer: Trouble Loading Data into Champ
by
hfbarrerat
• 0
Try myLoad <- champ.load("raw/",arraytype="EPIC")
Comment: BiocGenerics binary is outdated for macOS ARM
by
jennifer.wokaty
▴ 70
Thanks, Mike, for posting about this and thanks to Lori for noticing the lock. I removed it and RProtoBufLib passes R CMD check. Unfortunat…
Comment: BiocGenerics binary is outdated for macOS ARM
by
Michael Steinbaugh
▴ 90
Ah thanks for the update. Yeah I see that the flowClust release is the culprit: https://www.bioconductor.org/packages/release/bioc/html/flo…
Comment: Submitting BSgenome package for a new assembly
by
Manish
• 0
Thanks for the info. This is very helpful. -Manish
Votes
Comment: BiocGenerics binary is outdated for macOS ARM
flowCore: using read.FCS with which.lines is not time efficient?
Comment: BiocGenerics binary is outdated for macOS ARM
Comment: Submitting BSgenome package for a new assembly
How to create "trait data" file for WGCNA
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