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Recent ...
Replies
Comment: Combining two groups in contrast deseq2
by
Bine
▴
20
Thank you I looked at ?results:
## Example 1: two-group comparison
dds <- makeExampleDESeqDataSet(m=4)
dds <- DESeq(…
Comment: Volcano plots of DEGs from Swish are weird
by
Qin
▴
10
Thans for your reply. I'm sorry for reply so late, because I didn't getting any messages in my email. I will read details of the vignette.
Comment: At least one covariate is confounded with batch! Please remove confounded covari
by
NewBioInfo
•
0
Thank you, James. I was indeed using the wrong matrix. The `nonExtimable` did give me the column name which was causing the issue but I do …
Comment: Returning to edgeR version 3.26.1?
by
Gordon Smyth
43k
I don't think that any changes to edgeR between 3.26.1 and 3.26.8 could have caused the changes that you show.
Comment: Returning to edgeR version 3.26.1?
by
mvanhorn
•
0
Thank you very much for your reply!
Our project is a reanalysis of large sets of RNA-seq data to identify circular RNAs using the CIRIquan…
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