ReportingTools: Error using packet 1 arguments must have same length

0

Entering edit mode

mmokrejs • 0

@mmokrejs-16289

Last seen 6.8 years ago

Hi, I have some output from DESeq2 to be processed by ReportingTools. In thread C: DESeq2: Error using packet 1 arguments must have same length it turned out it is a ReportigTools issue. Would you please comment on this error, visible only in rendered figures?

library(ReportingTools)
desReport <- HTMLReport(shortName = "RNAseq_analysis_with_DESeq",
                        title = "Results of differential expression analysis using DESeq2 (cancer vs. normal)",
                        reportDirectory = "./reports")
publish(res, desReport, DataSet = dds, n = 50, pvalueCutoff = 0.01, lfc = 1,
        make.plots = TRUE, factor = dds$dex)
finish(desReport)

Thank you,

reportingtools • 2.1k views

ADD COMMENT • link 6.9 years ago mmokrejs • 0

0

Entering edit mode

Hi,

I had the same error. I think the error is caused by the lattice package. I could fix this, by setting factor (which I hadn't done before). This might indicate that something is wrong with the value of factor.

HTH, Christoph

ADD REPLY • link 5.9 years ago christoph.kaempf • 0

Login before adding your answer.