Showing : reportingtools • reset
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Having issues mapping gene Ids during ReportingTools::publish() from Bioconductor.
ReportingTools RNA-Seq RMarkdown
updated 4.0 years ago by 67k • written 4.0 years ago by ▴ 20
1
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4
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974
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ReportingTools publish(): no image when .modifyDF argument is included
ReportingTools
updated 5.5 years ago by 67k • written 5.5 years ago by • 0
0
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1
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1.8k
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ReportingTools: Error using packet 1 arguments must have same length
reportingtools
5.8 years ago mmokrejs • 0
0
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729
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Changing vertical scale to linear for expression reporting of DESeqDataSet
reportingtools deseq2
6.0 years ago trebbiano • 0
3
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7
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2.1k
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ReportingTools Segmentation fault
reportingtools reporting tools
updated 6.4 years ago by ▴ 10 • written 6.4 years ago by ▴ 20
2
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2
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1.3k
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How to add more columns to ReportingTools output?
reportingtools microarray annotation differential expression differential analysis
updated 6.7 years ago by 67k • written 6.7 years ago by • 0
0
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0
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1.7k
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Select what conditionsto graph in Report tools with Deseq containing multiple conditions
deseq2 ggplot2 reportingtools
7.8 years ago abass.conteh • 0
0
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3
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1.2k
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Error when installing ReportingTools
reportingtools
8.1 years ago Asma rabe ▴ 290
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4
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1.6k
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Error in GOFrame due to NA for unsupported organism (Gene Ontology)
reportingtools annotationhub gostats
updated 8.2 years ago by 67k • written 8.2 years ago by ▴ 20
2
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4
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1.3k
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ResrtingTools include pvalue NA
reportingtools deseq2 NA pvalue
updated 8.2 years ago by 42k • written 8.2 years ago by ▴ 10
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2
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2.0k
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Generating database with non model species to be use by ReportingTools
reportingtools annotationdbi annotationhub ensembldb
updated 8.2 years ago by ★ 2.1k • written 8.2 years ago by ▴ 20
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8
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1.8k
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ReportingTools include pvalue NA and comparissons
R reportingtools deseq2 pvalue coef
updated 8.2 years ago by 42k • written 8.2 years ago by ▴ 10
0
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1
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1.6k
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DESeq2 followed by Reporting tools lists blank ensemble gene ID's and symbols but has image, logFC and p-value intact in HTML file
deseq2 rnaseq reportingtools
updated 8.4 years ago by 42k • written 8.4 years ago by • 0
1
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4
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1.3k
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Methods in ReportingTools
reportingtools
updated 9.0 years ago by ▴ 70 • written 9.0 years ago by • 0
0
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0
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1.3k
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Change column width in ReportingTools
reportingtools
9.0 years ago benedikt.athmer • 0
1
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1
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1.2k
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How to add search functions and additional fields to the html file of DESeq2 results created with ReportingTools
ReportingTools deseq2 hwriter
updated 9.2 years ago by 67k • written 9.2 years ago by ▴ 30
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2
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1.5k
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hwriter or reportingtools: open link in new tab?
hyperlink ReportingTools hwriter
9.4 years ago Wade Davis ▴ 60
2
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3
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1.6k
views
HTMLReport with Ensembl IDs, with multifactorial design
DESeq2 ReportingTools
updated 9.5 years ago by 67k • written 9.5 years ago by ▴ 180
4
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6
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2.9k
views
HTMLReport of DESeq2 results with Ensembl Gene Ids
reportingtools publish deseq2
updated 9.5 years ago by ▴ 180 • written 9.7 years ago by • 0
6
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1
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3.2k
views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 9.7 years ago by ▴ 370 • written 10.8 years ago by ▴ 160
1
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6
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2.0k
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Problem on annotation of Deseq2 on reportingtools
Deseq2 reportingtools
updated 9.8 years ago by ▴ 70 • written 9.8 years ago by ▴ 40
0
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2
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1.2k
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ReportingTools does not work with PFAMHyperGResult object
reportingtools
updated 10.0 years ago by 1.6k • written 10.0 years ago by • 0
0
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5
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2.8k
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Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 10.2 years ago by ▴ 160 • written 10.2 years ago by 67k
0
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5
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1.8k
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ReportingTools error message
DESeq ReportingTools DESeq2 DESeq ReportingTools DESeq2
10.3 years ago Assa Yeroslaviz ★ 1.5k
0
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0
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1.3k
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KEGG pathway analysis with ReportingTools
Pathways GO ReportingTools Pathways GO ReportingTools
10.4 years ago Mayte Suarez-Farinas ▴ 510
0
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3
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1.9k
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ReportingTools and gene annotation
Annotation GO cycle ReportingTools DESeq2 Annotation GO cycle ReportingTools DESeq2
updated 10.6 years ago by 67k • written 10.6 years ago by ▴ 340
0
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7
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2.9k
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[ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default
Sequencing ReportingTools DESeq2 Sequencing ReportingTools DESeq2
updated 10.6 years ago by 67k • written 10.6 years ago by ▴ 30
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2
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1.7k
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Question about ReportingTools used with DESeq2
GO BSgenome BSgenome ReportingTools DESeq2 GO BSgenome BSgenome ReportingTools DESeq2
updated 10.8 years ago by 67k • written 10.8 years ago by ▴ 80
0
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1
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1.2k
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ReportingTools package
ReportingTools ReportingTools
updated 10.8 years ago by ▴ 10 • written 10.8 years ago by ▴ 160
0
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0
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920
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ReportingTools: formatting html report
Alignment ReportingTools Alignment ReportingTools
11.2 years ago Gabriel Becker ▴ 70
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0
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2.1k
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emacs org mode html export using jQuery DataTables (WAS: new package for generating interactive HTML reports)
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
11.7 years ago Malcolm Cook ★ 1.6k
0
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12
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2.4k
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new package for generating interactive HTML reports
Network limma GOstats GSEAlm edgeR ReportingTools Network limma GOstats GSEAlm edgeR
updated 11.7 years ago by ★ 1.6k • written 11.7 years ago by ▴ 20
32 results • Page 1 of 1
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Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k
I request the post here, so not a problem.
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by micolak0115 • 0
Thanks for the advice Michael. I will try this with my future test datasets.
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by micolak0115 • 0
Hi James, I will try to leave only relevant questions on bioconductor forum hereinafter. Thanks for the note. Cheers, Alan
Comment: SingleR Label.Ont by Stepah • 0
[Aussie Play][1] cares about its Australian players by offering a safe and secure gaming experience where there is never a dull moment. The…
Comment: ensemblVEP deprecation and how to reproduce by Vincent J. Carey, Jr. 6.7k
What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…
Votes
DEXseq: How to do differential exon usage of genes with overlapping exons
A: Moderated F-test followed by moderated t-test in limma
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
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