Hi everyone,

    I am using genotype.Illumina() in  R packge crlmm to deal with Illumina genotyping data (idat file). However, some errors appear as follows: 

   cnSet <- genotype.Illumina(sampleSheet=samplesheet, arrayNames=arrayNames,arrayInfoColNames=arrayInfo, cdfName="human370v1c",batch=batch)

   Quantile normalizing 1 arrays by 12 strips.
  |======================================================================| 100%
Calibrating 1 arrays.
  |                                                                      |   0%Error in quantile.default(M, c(1, 5)/6, names = FALSE) : 
  missing values and NaN's not allowed if 'na.rm' is FALSE

Please help me solve this problem

Thank you very much

Best