Question: vcf to venn diagram
gravatar for mictadlo
11 months ago by
mictadlo0 wrote:

Hi, I created VCF files for 5 cultivars in the following way:

bcftools mpileup -Ou -f $2 ${1}/all.sorted.dedup.bam | bcftools call -mv -Ob -o ${1}/calls.bcf
bcftools view -i '%QUAL>=20' ${1}/calls.bcf > ${1}/calls-gt-q20.vcf

How can I create a venn-diagram out of those files?

Thank you in advance,

vcf snps venn diagram ggplot2 • 319 views
ADD COMMENTlink modified 11 months ago • written 11 months ago by mictadlo0
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