Bioconductor Snps

Showing : snps • reset

vote

replies

3.1k

views

snps VCF

updated 2.7 years ago by Arafat • 0 • written 7.9 years ago by rkdonthu ▴ 10

votes

764

views

hierClust R SNPs clustering

updated 2.8 years ago by James W. MacDonald 67k • written 2.8 years ago by sekhwal • 0

votes

replies

1.1k

views

SNPs

5.8 years ago pltbiotech_tkarthi • 0

votes

replies

1.4k

views

snps vcf venn diagram ggplot2

6.1 years ago mictadlo ▴ 10

votes

replies

1.4k

views

bioconductor molecular biology snps

updated 6.1 years ago by James W. MacDonald 67k • written 6.1 years ago by jebreen20 • 0

votes

replies

2.9k

views

motifbreakR vcf snps motif analysis

updated 6.6 years ago by Valerie Obenchain ★ 6.8k • written 6.6 years ago by svlachavas ▴ 840

votes

replies

1.7k

views

variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.6 years ago by Lna • 0

votes

1.6k

views

hsapiens snps indels

updated 9.1 years ago by Hervé Pagès 16k • written 9.2 years ago by kredens • 0

votes

1.7k

views

Biostrings SNPs alignment

updated 9.5 years ago by Hervé Pagès 16k • written 9.5 years ago by ben.ward ▴ 30

votes

replies

2.0k

views

gviz ideogram snps

updated 10.0 years ago by florian.hahne@novartis.com ★ 1.6k • written 10.0 years ago by vnyirongo • 0

votes

replies

2.5k

views

overlap snps granges iranges

updated 10.3 years ago by Michael Lawrence ★ 11k • written 10.3 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

Recent ...

Replies

Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene by Michael Love 43k

See swish vignette, these are explained.

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

Votes

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

Awards • All