I am trying to read from a FCS file but I get the following error:
Error in readFCSdata(con, offsets, txt, transformation, which.lines, scale, : $PnRNAis larger than R's numeric limit:1.79769313486232e+308 In addition: Warning message: In readFCSdata(con, offsets, txt, transformation, which.lines, scale, : NAs introduced by coercion
The thing is, when I try to read the same file in .csv format, I can read it!
# library library('flowCore') library('Biobase') library('data.table') # data data <- read.table('file.csv', dec = ".", sep = ",") data <- read.FCS('file.fcs', alter.names = F, transformation = "linearize")
My question is: is there a memory limit for read.FCS()? And if so, how do I extend it?
All the best, Lloyd Izard