When to Correct for Cell Type Heterogeneity in ChAMP Pipeline

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Gurkenkönig ▴ 10

@gurkenkonig-16328

Last seen 5.8 years ago

When is the right time to correct for different cell counts in whole blood samples on Illumina EPIC Chips when analysing the data with the ChAMP-Pipeline? After Normalization or after Batch Effect Correction? And is the method even working with EPIC data?

microarray • 771 views

ADD COMMENT • link updated 3.9 years ago by Ankit ▴ 20 • written 5.8 years ago by Gurkenkönig ▴ 10

1

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Hi.

Did you get the solution for correction of blood celll composition for EPIC array data?

I would appreciate any help

Thank you

ADD REPLY • link 3.9 years ago Ankit ▴ 20

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