Showing : microarray • reset
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pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.5 years ago by ▴ 10
1
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4
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3.1k
views
How to process Nimblegen microarray .pair files to get normalized expression matrix
Microarray Preprocessing NimbleGen Normalization
written 20 months ago by • 0
2
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2
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2.8k
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Biostatistician Position: UMass Medical School
Microarray Microarray
written 17.0 years ago by ▴ 190
0
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2
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794
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Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray Alignment Biostrings
written 15 months ago by ▴ 70
1
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2
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1.0k
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Filter by expression and keep probes in limma
R filter limma Normalization Microarray
15 months ago Abdul ▴ 20
2
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2
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747
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Question about transforming log expression values to antilog values in limma
IlluminaChip limma AffymetrixChip Normalization Microarray
15 months ago Abdul ▴ 20
0
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2
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784
views
Full list of differential genes not obtained in topTable
Microarray GEOquery topTable limma
updated 16 months ago by 51k • written 16 months ago by • 0
1
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6
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2.0k
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can negative value microarray matrix data analysed by limma directly
limma microarray normalization
updated 11 months ago by 51k • written 3.9 years ago by ▴ 20
2
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2
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747
views
Question about avereps function of limma
avereps probes average limma Microarray
updated 16 months ago by 51k • written 16 months ago by ▴ 10
0
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0
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709
views
Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
17 months ago jsharif • 0
0
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1
reply
705
views
Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 18 months ago by 66k • written 18 months ago by • 0
0
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2
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1.0k
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Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
18 months ago dqt • 0
0
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2
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786
views
Celfiles not reading in
Microarray
written 19 months ago by • 0
1
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2
replies
6.6k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 19 months ago by ▴ 20 • written 6.6 years ago by • 0
6
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6
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1.6k
views
Too many differentially expressed miRNA with limma
limma miRNA Microarray
20 months ago Sara ▴ 10
0
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17
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2.6k
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Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 18 months ago by 51k • written 21 months ago by • 0
0
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1
reply
757
views
Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 2.1 years ago by 51k • written 2.1 years ago by • 0
0
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8
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1.6k
views
Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
2.1 years ago YC • 0
2
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13
replies
4.7k
views
Error in using r
microarray
updated 2.1 years ago by • 0 • written 7.8 years ago by • 0
0
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4
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1.1k
views
Thoughts on how to model gene expression data from two groups in a clinical trial
Microarray DifferentialExpression
2.1 years ago S • 0
1
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2
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896
views
Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
2.1 years ago Mikołaj Mierzejewski • 0
1
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2
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1.2k
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Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
2.1 years ago Mikołaj Mierzejewski • 0
4
votes
10
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2.1k
views
Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
pd.hg.u219 Microarray oligo AffymetrixChip
2.2 years ago Yang Shi ▴ 10
3
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4
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1.9k
views
Quantile Normalization after rma or not?
limma Microarray oligo
2.2 years ago Yang Shi ▴ 10
2
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2
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896
views
Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0
hta20transcriptcluster.db Microarray oligo
2.2 years ago Yang Shi ▴ 10
2
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5
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2.1k
views
Get corresponding gene id for probe id from Affymetrix array
AnnotationDbi Microarray
2.2 years ago nhaus ▴ 50
0
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2
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861
views
Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
2.2 years ago amir.rakhimov.b • 0
0
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2
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1.3k
views
Time course experiment using limma
limma Multi-levelExperiments Microarray
2.3 years ago Wendy • 0
0
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12
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1.7k
views
Annotating featureData to an affymetrix Xcel microarray
Microarray
2.3 years ago Adam • 0
0
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0
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682
views
Error in svd(X) when using edge lrt (or odp) function.
edge Microarray longitudinal
2.4 years ago emily • 0
1
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7
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8.1k
views
Oligo RMA normalization : ERROR; return code from pthread_create() is 22
microarray normalization oligo HTA
updated 2.4 years ago by • 0 • written 5.5 years ago by ▴ 10
2
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5
replies
2.0k
views
Adjust for base line gene expression in limma model
limma Microarray
updated 2.6 years ago by 51k • written 2.6 years ago by • 0
4
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6
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1.3k
views
RMA on different disease labels
rma background microarray normalization
updated 2.7 years ago by 66k • written 2.7 years ago by • 0
1
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1
reply
1.3k
views
Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 2.9 years ago by 66k • written 2.9 years ago by ▴ 50
5
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2
replies
2.5k
views
Query regarding the use of eBayes + topTable and treat + topTreat
Microarray limma DifferentialExpression
updated 23 months ago by 51k • written 2.9 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Re-normalize microarray dataset in R
microarray quantile expression R Normalization
updated 3.0 years ago by ▴ 80 • written 3.0 years ago by ▴ 10
3
votes
5
replies
1.8k
views
Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 3.1 years ago by 51k • written 3.1 years ago by • 0
1
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1
reply
1.5k
views
How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 3.2 years ago by ★ 4.0k • written 3.2 years ago by • 0
1
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2
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1.5k
views
RUV4 for microarrays
RUV4 RUV Microarray
3.2 years ago Antonio • 0
0
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2
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2.2k
views
How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
3.3 years ago waiyin0923 • 0
0
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1
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934
views
Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip Microarray affymetrix
updated 3.3 years ago by ★ 4.0k • written 3.3 years ago by • 0
1
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2
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1.4k
views
How to quantile normalize arraystar lncRNA microarray data?
limma Microarray
3.3 years ago a.deb • 0
3
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3
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1.4k
views
Weird MAplot with DEGs lying along the diagonals
limma Microarray AgilentChip MA-plot Normalization
3.4 years ago FedeXander • 0
0
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2
replies
1.8k
views
WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
3.4 years ago jpwl2 • 0
6
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4
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1.3k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
3.5 years ago snijesh ▴ 20
1
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2
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1.5k
views
How to do limma on 3 factors with multiple levels (e.g 3-way anova) on microarray log values
interactions 3factors limma Microarray
3.5 years ago Dan ▴ 20
3
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9
replies
1.6k
views
limma analysis when only Cy5 was used
MicroarrayData limma Microarray
3.5 years ago Daniel.Schnell • 0
0
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1
reply
1.3k
views
Creating a model matrix for three age groups using two-colour arrays
Microarray BRAIN Microarray BRAIN
updated 3.5 years ago by 51k • written 15.7 years ago by ▴ 10
5
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8
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2.6k
views
how to annotate arrays
affy annotation microarray oligo
updated 3.6 years ago by 66k • written 9.0 years ago by • 0
0
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1
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1.1k
views
Normalisation of protein micro array data using VSN
microarray normalization protein
updated 3.7 years ago by ★ 13k • written 5.1 years ago by • 0
50 results • Page 1 of 1
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Answer: Validity of SingleR with very small bulk RNAseq reference by ATpoint ★ 4.2k
The vignette data are "large" because it is single-cell data and each cell is considered in this case a "replicate". With bulk RNA-seq you …
Answer: Plot PCA with ellipses using ggplot by ATpoint ★ 4.2k
This is rather a ggplot than DESeq2 question, please see for example https://stackoverflow.com/questions/49931681/error-too-few-points-to-c…
Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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