Hello,

I'm running "identify" function as idx <- identify(resLFC$baseMean, resLFC$log2FoldChange). I think it would be quite fast, but it's taking forever. Is it ok to run "identify" after "lfcShrink(dds, coef = "xx", method = "apeglm)" ?

Thanks, Luciana

It is waiting for you to press "Esc" or some other signal to exit the point identification loop. See ?identify:

For the usual X11 device the identification process is terminated by pressing any mouse button other than the first. For the quartz device the process is terminated by pressing either the pop-up menu equivalent (usually second mouse button or Ctrl-click) or the ESC key. The identification process is terminated by clicking the second button and selecting ‘Stop’ from the menu, or from the ‘Stop’ menu on the graphics window.

Thank you very much. I was pressing ESC, but I was not clicking on the plot, which seems very weird for me.