Question: Help with mapping Kegg hsa01100 using pathview
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gravatar for Ahdee
8 months ago by
Ahdee40
United States
Ahdee40 wrote:

Dear all, recently I did an enrichment analysis showing that my RNA.seq data is enriched for the global pathway hsa01100, however on trying to plot this with pathview it does not seem to highlight the genes. I found a similar post previously but its not exactly what I wanted since I'm interested in the actual gene --> perhaps to enzyme showing up on the map.
https://support.bioconductor.org/p/54410/ Is this possible? Perhaps converting my 50 or so genes to enzyme first? Here is example of some of the genes, B3GALNT1,TM7SF2,TST,MPST,PPT2,PSPH,CMBL,MTAP thanks!

pathview kegg pathway • 125 views
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