Is the STRINGdb server down?
5
0
Entering edit mode
@shahroze786-20336
Last seen 5.8 years ago

Is the STRING db server down? I am getting this error when trying to initialize the STRING object:

string <- STRINGdb()

Error in open.connection(file, "rt") : cannot open the connection to 'http://string.uzh.ch/permanent/string/current_version' In addition: Warning message: In open.connection(file, "rt") : URL 'http://string.uzh.ch/permanent/string/current_version': status was 'Couldn't connect to server'

STRINGdb R protein • 3.1k views
ADD COMMENT
0
Entering edit mode

We have a major hardware failure on the server that handles stringdb package API. We are working on it, but at this point we don't know when it'll be fixed.

Could be today, but hopefully not longer then early next week. If we encounter any further delays I'll write here.

Sorry for the inconvenience. Normal STRING API and all other STRING's parts are unaffected.

ADD REPLY
0
Entering edit mode

Okay thanks for your reply.

ADD REPLY
0
Entering edit mode

I believe it is working now? I noticed I can't use version 11 of STRING with the STRINGdb R package.

ADD REPLY
0
Entering edit mode

Because of this server failure I'm now looking at the possibility of the update of string package to STRINGv11 API, so it won't rely on the legacy server. It seems doable, so it may be available with the next update.

ADD REPLY
0
Entering edit mode
@james-w-macdonald-5106
Last seen 2 days ago
United States

I just tried clicking on the link you provided, and got no response. So my guess would be yes.

ADD COMMENT
0
Entering edit mode
crainsir • 0
@crainsir-20344
Last seen 5.8 years ago

I got the same error just now.But the website of String is OK.

ADD COMMENT
0
Entering edit mode
crainsir • 0
@crainsir-20344
Last seen 5.8 years ago

I got the same error just now.But the website of String is OK. I mean I can use the website of STRING as usual.

ADD COMMENT
0
Entering edit mode
@zhanghongjie000-20935
Last seen 5.1 years ago

stringdb <- STRINGdb$new() Error in open.connection(file, "rt") : cannot open the connection to 'http://string.uzh.ch/permanent/string/currentversion. when I use STRINGdb$new(),I can not link the database,so which files should I download by the link(https://string-db.org/cgi/download.pl?sessionId=xFXh0b3jcXBm)?

ADD COMMENT
0
Entering edit mode

The server is temporary down, we are working on it. Sorry for the inconvenience.

ADD REPLY
0
Entering edit mode
@zhanghongjie000-20935
Last seen 5.1 years ago

though website of String is OK,but I don't know how to use the 'new' function to get a STRING object.could you give me some advice?

ADD COMMENT
0
Entering edit mode

STRING website and STRING R package backend are on different servers. Only the STRING package server is down.

ADD REPLY
0
Entering edit mode

It should be up again.

ADD REPLY
0
Entering edit mode

Hello, Is it possible that STRING package server is down again? I cannot use functions that need connection to STRING server.

ADD REPLY

Login before adding your answer.

Traffic: 437 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6