Bioconductor Protein

Showing : protein • reset

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302

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protein database glutathionylation PTM

23 months ago Camelia • 0

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744

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microarray normalization protein

updated 2.6 years ago by Wolfgang Huber 13k • written 4.0 years ago by keniajin • 0

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830

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Gviz protein visualization UcscTrack protein domains

updated 2.7 years ago by James W. MacDonald 63k • written 2.7 years ago by paul.jaschke ▴ 10

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539

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microarray protein analysis ProteomeProfiler

updated 3.2 years ago by Gordon Smyth 47k • written 3.2 years ago by hcnbox • 0

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1.8k

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STRINGdb R protein

updated 4.0 years ago by zhanghongjie000 • 0 • written 4.2 years ago by shahroze786 • 0

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593

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Protein iranges sequencing

4.2 years ago ieuangw • 0

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700

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protein disease pathway analysis pathways

4.9 years ago ረ • 0

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799

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dnaseq pathway analysis protein biomarkers

5.3 years ago emadelhewihy • 0

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690

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R blast blastsequences protein

5.4 years ago andres.susrud • 0

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936

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biostrings iranges sequence alignment protein

updated 6.3 years ago by Michael Lawrence 11k • written 6.3 years ago by Assa Yeroslaviz ★ 1.5k

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1.7k

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biostrings fasta protein

updated 6.4 years ago by James W. MacDonald 63k • written 6.4 years ago by fastabest • 0

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1.8k

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xcms convert protein

updated 6.5 years ago by Johannes Rainer ★ 2.0k • written 6.5 years ago by ray.bacala • 0

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950

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bioinformatics protein variantannotation data integration Job

6.6 years ago stephan.pabinger • 0

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1.0k

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iranges biostrings fasta protein readaastringset

updated 6.6 years ago by Michael Lawrence 11k • written 6.6 years ago by Assa Yeroslaviz ★ 1.5k

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1.5k

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protein vcf

8.1 years ago dan.gatti • 0

15 results • Page 1 of 1

Recent ...

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Answer: DESeq2 + analysis question for design with uneven time point design by Michael Love 40k

I'd recommend reaching out to a local statistician or someone familiar with linear models in R. Unfortunately, I have to reserve my time on…

Answer: Genes with highest differential expression have very low read counts for most ge by Michael Love 40k

Have you use `lfcShrink`? Or `results` with `lfcThreshold`? Either of these are recommended for prioritizing DE genes.

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

> equivqalent in limma would be like a gene by gene specificic design matrix where no BL time point would exist but a continuous variable t…

Comment: Extract Limma Adjusted Values for Plotting by ATpoint ★ 2.9k

Yes, with normalized counts on log2 scale.

Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20

A no I never referred to transcriptomic data when I was talking about "standard procedure" I was referring to the way we analyze longitudin…

Votes

A: Ranges from a fasta file

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Awards • All

Scholar to Mike Smith ★ 6.0k