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protein
•
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0
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0
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448
views
Database/tool that is able to tell me if the glutathionylation of a protein inhibits it?
protein
database
glutathionylation
PTM
2.7 years ago
Camelia
• 0
0
votes
1
reply
1.0k
views
Normalisation of protein micro array data using VSN
microarray
normalization
protein
updated 3.4 years ago by
Wolfgang Huber
★ 13k • written 4.8 years ago by
keniajin
• 0
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 3.5 years ago by
James W. MacDonald
65k • written 3.5 years ago by
paul.jaschke
▴ 10
1
vote
4
replies
857
views
package to analyze generic protein microarray data
microarray
protein
analysis
ProteomeProfiler
updated 4.0 years ago by
Gordon Smyth
50k • written 4.0 years ago by
hcnbox
• 0
0
votes
15
replies
2.4k
views
Is the STRINGdb server down?
STRINGdb
R
protein
updated 4.8 years ago by
zhanghongjie000
• 0 • written 5.0 years ago by
shahroze786
• 0
0
votes
1
reply
797
views
Annotating protein sequences
Protein
iranges
sequencing
5.0 years ago
ieuangw
• 0
0
votes
1
reply
948
views
Protein pathway analysis -- Classify, organize, and cluster a list of proteins / discovering relations between a set of proteins and linking them to …
protein
disease
pathway analysis
pathways
5.7 years ago
ረ
• 0
0
votes
1
reply
1.0k
views
How to identify Disease biomarkers " DNA sequences as biomarkers "
dnaseq
pathway analysis
protein
biomarkers
6.1 years ago
emadelhewihy
• 0
0
votes
0
replies
901
views
batch blast matrix of protein sequences from R
R
blast
blastsequences
protein
6.1 years ago
andres.susrud
• 0
2
votes
4
replies
1.3k
views
plotting proteases digestion points in a protein
biostrings
iranges
sequence
alignment
protein
updated 7.1 years ago by
Michael Lawrence
★ 11k • written 7.1 years ago by
Assa Yeroslaviz
★ 1.5k
1
vote
2
replies
2.1k
views
Wrong protein sequence fetched with R's Biostrings readDNAStringSet function
biostrings
fasta
protein
updated 7.2 years ago by
James W. MacDonald
65k • written 7.2 years ago by
fastabest
• 0
1
vote
7
replies
2.2k
views
Can XCMS output continuum/profile data to netCDF format?
xcms
convert
protein
updated 7.3 years ago by
Johannes Rainer
★ 2.0k • written 7.3 years ago by
ray.bacala
• 0
0
votes
0
replies
1.1k
views
Job:
PhD Position in Bioinformatics
bioinformatics
protein
variantannotation
data integration
Job
7.3 years ago
stephan.pabinger
• 0
0
votes
5
replies
1.3k
views
Splitting a fasta file based on specific Amino acid for plotting
iranges
biostrings
fasta
protein
readaastringset
updated 7.4 years ago by
Michael Lawrence
★ 11k • written 7.4 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
1.7k
views
Producing alternate protein sequences from VCF
protein
vcf
8.9 years ago
dan.gatti
• 0
15 results • Page
1 of 1
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Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Votes
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
C: How to check that the reads in two fastq files are in the same order
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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