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rc1253
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@rc1253-19367
Last seen 5.1 years ago
I have followed to typical WGCNA workflow and produced an eigengene network for the consensus modules.
However, after TopGO analysis I have identified some interesting modules. Instead of producing a noisy plot with all my modules - is there a way to only plot modules for my selected ones?
Here's my code for the standard plot:
plotEigengeneNetworks(
bnet$multiMEs,
moduleColors,
letterSubPlots = FALSE, Letters = NULL,
excludeGrey = TRUE, greyLabel = "grey",
plotDendrograms = TRUE, plotHeatmaps = TRUE,
setMargins = TRUE, marDendro = NULL, marHeatmap = NULL,
colorLabels = TRUE, signed = TRUE,
heatmapColors = NULL,
plotAdjacency = TRUE,
printAdjacency = FALSE, cex.adjacency = 0.9,
coloredBarplot = TRUE, barplotMeans = TRUE, barplotErrors = FALSE,
plotPreservation = "standard",
zlimPreservation = c(0, 1),
printPreservation = FALSE, cex.preservation = 0.9
)