Question: Plotting consensus eigengene networks for specific interesting modules?
0
gravatar for rc1253
3 months ago by
rc12530
rc12530 wrote:

I have followed to typical WGCNA workflow and produced an eigengene network for the consensus modules.

However, after TopGO analysis I have identified some interesting modules. Instead of producing a noisy plot with all my modules - is there a way to only plot modules for my selected ones?

Here's my code for the standard plot:

plotEigengeneNetworks(
bnet$multiMEs, 
moduleColors, 
letterSubPlots = FALSE, Letters = NULL, 
excludeGrey = TRUE, greyLabel = "grey", 
plotDendrograms = TRUE, plotHeatmaps = TRUE, 
setMargins = TRUE, marDendro = NULL, marHeatmap = NULL,
colorLabels = TRUE, signed = TRUE, 
heatmapColors = NULL, 
plotAdjacency = TRUE,
printAdjacency = FALSE, cex.adjacency = 0.9,
coloredBarplot = TRUE, barplotMeans = TRUE, barplotErrors = FALSE, 
plotPreservation = "standard",
zlimPreservation = c(0, 1), 
printPreservation = FALSE, cex.preservation = 0.9
)
wgcna • 60 views
ADD COMMENTlink written 3 months ago by rc12530
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