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wgcna
•
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0
votes
0
replies
53
views
Does verboseScatterplot in WGCNA package allow for highlighting a subset of genes
WGCNA
4 days ago
S
• 0
0
votes
0
replies
102
views
Problems running WGCNA
WGCNA
5 weeks ago
S
• 0
0
votes
0
replies
100
views
coexpression networks
WGCNA
igraph
8 weeks ago
María José
• 0
0
votes
0
replies
73
views
A question about GWENA R/Bioconductor package
proteomics
GWENA
Proteomics
WGCNA
8 weeks ago
Abdullah
• 0
0
votes
0
replies
86
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation
wgcna
network
8 weeks ago
pharamac
• 0
0
votes
0
replies
101
views
WGCNA: minModuleSize is not responding correctly
wgcna
Network
WGCNA
minModuleSize
9 weeks ago • updated 8 weeks ago
bioinformaticssrm2011
• 0
2
votes
1
reply
188
views
WGCNA: weird issue of module with a single gene
network
co-expression
WGCNA
updated 4 months ago by
andres.firrincieli
▴ 50 • written 4 months ago by
ikumar2000
▴ 10
0
votes
1
reply
226
views
WGCNA - Network construction and module detection
gene
Clustering
wgcna
flashclust
updated 4 months ago by
andres.firrincieli
▴ 50 • written 5 months ago by
Recep
• 0
0
votes
0
replies
138
views
MM-GS plot doesn't show any negative correlation
wgcna
6 months ago
shubhankar.pawar
• 0
0
votes
1
reply
281
views
WGCNA Export Eigengene Adjacency/Correlation values export
WGCNA
updated 6 months ago by
Cannabis Equipment Financing
• 0 • written 6 months ago by
803ebee7
• 0
0
votes
0
replies
157
views
ARACNe Sample Size
grndata
GRN
ARACNE
WGCNA
6 months ago
Harrsha
• 0
0
votes
0
replies
135
views
Enrichment in genomic regions
Enrichment
clusterPro
WGCNA
6 months ago
María José
• 0
0
votes
0
replies
158
views
How to create consensus network from SampledBlockwiseModules in WGCNA?
NetworkInference
SampledBlockWiseModules
WGCNA
6 months ago
as8020
• 0
0
votes
0
replies
139
views
WGCNA consensusMEDdissimilrity
WGCNA
8 months ago
María José
• 0
1
vote
3
replies
633
views
WGCNA error
WGCNA
8 months ago
ayabalbaa1990
• 0
0
votes
0
replies
231
views
The gene clusters from the WGCNA dendrogram output are not in order
Clustering
WGCNA
9 months ago
chiwut.wong
• 0
0
votes
0
replies
213
views
FILTER GENES FOR WGCNA
WGCNA
9 months ago
María José
• 0
0
votes
0
replies
278
views
Only 1 gene/ feature is present in module after WGCNA analysis
RNASeq
Clustering
cluster
WGCNA
9 months ago
chiwut.wong
• 0
0
votes
0
replies
349
views
WGCNA: Picking soft threshold before and after batch effect correction for Microbial data
wgcna
WGCNA
10 months ago
bioinformaticssrm2011
• 0
0
votes
0
replies
230
views
WGCNA analsyis: Cytoscape visualization (Error in recalculating topological overlap)
analsyis
WGCNA
10 months ago
Afsana
• 0
0
votes
0
replies
271
views
WGCNA with large Methylation matrix
wgcna
R
WGCNA
Methylation
11 months ago
Lorenzo
• 0
0
votes
1
reply
280
views
adjacency matrix in WGCNA returns NA
Coexpressionnetwork
WGCNA
written 12 months ago by
APPUS
• 0
0
votes
1
reply
449
views
WGCNA: Obtaining a consensus network from sampledBlockwiseModules function output
Network
consensus
sampledBlockwiseModules
resampling
WGCNA
updated 12 months ago by
Peter Langfelder
★ 2.7k • written 12 months ago by
Caleb Bostwick
▴ 30
0
votes
0
replies
407
views
WGCNA Preservation error
preservation
WGCNA
13 months ago
Sara
• 0
0
votes
1
reply
454
views
Outlier Removal WGCNA
RNASeq
WGCNA
updated 13 months ago by
Vincent J. Carey, Jr.
6.6k • written 13 months ago by
jms2520
• 0
0
votes
0
replies
434
views
Removing low count/low variance genes
WGCNA
13 months ago
Aya
• 0
1
vote
9
replies
1.8k
views
Deseq2 normalization for WGCNA
RNASeq
Deseq2
DESeq2
WGCNA
updated 8 months ago by
Michael Love
39k • written 13 months ago by
jms2520
• 0
0
votes
0
replies
345
views
WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub
correlation
eigen
WGCNA
13 months ago
mairah.khan
• 0
0
votes
0
replies
473
views
How to choose singed or unsigned network in step-by-step WGCNA
WGCNA
13 months ago
synat.keam
• 0
0
votes
1
reply
418
views
Trouble with gene dendrogram
Network
RNASeq
WGCNA
updated 15 days ago by
shuo
• 0 • written 14 months ago by
jms2520
• 0
0
votes
3
replies
872
views
Problem getting soft threshold power using WGCNA for RNA-seq data
RNASeq
WGCNA
14 months ago
jms2520
• 0
0
votes
1
reply
351
views
Summarising WGCNA data with modules and their corresponding gene ID and statistics
RNASeq
WGCNA
14 months ago
synat.keam
• 0
0
votes
0
replies
251
views
WGCNA Consensus Module Sign Question
wgcna
15 months ago
erik.burchard
• 0
0
votes
2
replies
427
views
WGCA tutorial related question
WGCNA
15 months ago
wes
• 0
0
votes
0
replies
302
views
WGCNA error during network construction
WGCNA
Network
R
15 months ago
gitanjali
• 0
0
votes
1
reply
531
views
pre-proccessing of TCGA data for WGCNA
TCGAbiolinks
WGCNA
updated 17 months ago by
Michael Love
39k • written 17 months ago by
txtbookir
• 0
0
votes
0
replies
282
views
WGCNA out of memory
wgcna
RNASeq
18 months ago
zli1
• 0
0
votes
1
reply
843
views
WGCNA adjust p value
WGCNA
updated 18 months ago by
Kevin Blighe
3.7k • written 18 months ago by
jason.taotaotan
▴ 30
0
votes
0
replies
308
views
Working with Binary Categorical Data using WGCNA and Unsigned Networks
WGCNA
18 months ago
schum266
• 0
0
votes
1
reply
607
views
Determining number of genes in each module based on color in WGCNA package
WGCNA
19 months ago
schum266
• 0
0
votes
1
reply
392
views
Query regarding WGCNA module formation
WGCNA
RNAseq
RNASeqData
updated 20 months ago by
Lluís Revilla Sancho
▴ 700 • written 20 months ago by
abhisek001
• 0
0
votes
1
reply
340
views
Query regarding WGCNA module
WGCNA
updated 20 months ago by
andres.firrincieli
▴ 50 • written 20 months ago by
abhisek001
• 0
0
votes
1
reply
836
views
Removing batch effect by sva or combat and subsequent correlation analysis by WGCNA
WGCNA
impute
sva
updated 20 months ago by
sebastian.lobentanzer
▴ 50 • written 20 months ago by
chiwut.wong
• 0
1
vote
1
reply
571
views
No genes with Module Membership > 0.8
wgcna
WGCNA
hubgenes
updated 22 months ago by
Vivek
▴ 50 • written 2.0 years ago by
Hanna
▴ 10
6
votes
1
reply
2.1k
views
WGCNA: Module preservation vs consensus analysis
WGCNA
wgcna
updated 22 months ago by
Vivek
▴ 50 • written 23 months ago by
Colari19
▴ 20
0
votes
0
replies
468
views
Consensus wgcna soft threshold for each data
Transcriptomics
WGCNA
wgcna
22 months ago
2323982403
▴ 50
0
votes
0
replies
349
views
Sample size on Differential Network Analysis
coexpression
WGCNA
22 months ago
Hanna
▴ 10
0
votes
2
replies
804
views
WGCNA - Outliers after creating sample tree
MicroarrayData
WGCNA
Microarray
23 months ago
jpwl2
• 0
0
votes
1
reply
680
views
Differential Network analysis
WGCNA
updated 23 months ago by
Kevin Blighe
3.7k • written 23 months ago by
Hanna
▴ 10
0
votes
0
replies
656
views
WGCNA - TOM Similarity
WGCNA
23 months ago
Svet
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Bernardo
• 0
Just did that, thank you for the suggestion.
Comment: Empty ChipQC Report
by
Okan
• 0
Hi, I have the same issue. Have you found any solution or any reason why this is happening?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
Sorry, I don't understand your experiment. You are reading the edgeR Section on on what to do without replicates, but your experiment appe…
Votes
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Volcano Plot in R
Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
Answer: MA plot
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