I continue to get this error when trying to use biomaRt: my code: Genenames <- gsessionInfo()etBM(attributes=c('ensemblgeneidversion', 'ensemblgeneid','externalgenename'), filters = 'ensemblgeneidversion', values = EIds, mart = ensemblmart95) resulting error: Batch submitting query [===>--------------------------------------] 10% eta: 31sError in getBM(attributes = c("ensemblgeneidversion", "ensemblgene_id", : The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1. Please report this on the support site at http://support.bioconductor.org
sessionInfo() R version 3.5.0 (2018-04-23) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS 10.14
Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale: [1] enCA.UTF-8/enCA.UTF-8/enCA.UTF-8/C/enCA.UTF-8/en_CA.UTF-8
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] WGCNA1.66 fastcluster1.1.25 dynamicTreeCut1.63-1
[4] ggExtra0.8 viridis0.5.1 viridisLite0.3.0
[7] ggplot23.1.0 biomaRt2.38.0 edgeR3.24.3
[10] limma3.38.3 reshape0.8.8 dplyr0.7.8
[13] plyr1.8.4 reshape21.4.3
loaded via a namespace (and not attached):
[1] bitops1.0-6 matrixStats0.54.0 fit.models0.5-14
[4] robust0.4-18 bit640.9-7 doParallel1.0.14
[7] RColorBrewer1.1-2 progress1.2.0 httr1.4.0
[10] backports1.1.3 tools3.5.0 R62.3.0
[13] rpart4.1-13 Hmisc4.2-0 DBI1.0.0
[16] lazyeval0.2.1 BiocGenerics0.28.0 colorspace1.4-0
[19] nnet7.3-12 withr2.1.2 tidyselect0.2.5
[22] gridExtra2.3 prettyunits1.0.2 preprocessCore1.44.0
[25] bit1.1-14 curl3.3 compiler3.5.0
[28] Biobase2.42.0 htmlTable1.13.1 xml21.2.0
[31] labeling0.3 checkmate1.9.1 scales1.0.0
[34] mvtnorm1.0-8 DEoptimR1.0-8 robustbase0.93-3
[37] stringr1.3.1 digest0.6.18 foreign0.8-71
[40] rrcov1.4-7 base64enc0.1-3 pkgconfig2.0.2
[43] htmltools0.3.6 htmlwidgets1.3 rlang0.3.1
[46] impute1.56.0 rstudioapi0.9.0 RSQLite2.1.1
[49] shiny1.2.0 bindr0.1.1 acepack1.4.1
[52] RCurl1.95-4.11 magrittr1.5 GO.db3.7.0
[55] Formula1.2-3 Matrix1.2-15 Rcpp1.0.0
[58] munsell0.5.0 S4Vectors0.20.1 stringi1.2.4
[61] MASS7.3-51.1 grid3.5.0 blob1.1.1
[64] parallel3.5.0 promises1.0.1 crayon1.3.4
[67] miniUI0.1.1.1 lattice0.20-38 splines3.5.0
[70] hms0.4.2 locfit1.5-9.1 knitr1.21
[73] pillar1.3.1 codetools0.2-16 stats43.5.0
[76] XML3.98-1.16 glue1.3.0 latticeExtra0.6-28
[79] data.table1.12.0 httpuv1.4.5.1 foreach1.4.4
[82] gtable0.2.0 purrr0.3.0 assertthat0.2.0
[85] xfun0.4 mime0.6 xtable1.8-3
[88] later0.7.5 pcaPP1.9-73 survival2.43-3
[91] tibble2.0.1 iterators1.0.10 AnnotationDbi1.44.0
[94] memoise1.1.0 IRanges2.16.0 bindrcpp0.2.2
[97] cluster_2.0.7-1