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0
votes
2
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71
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Justify title track when rotation = 0
Gviz
gviz
updated 4 hours ago by
Benson
• 0 • written 4 days ago by
Xenia
• 0
0
votes
2
replies
116
views
Bile acid analysis with limpa
limpa
MassSpectrometry
MassSpectrometryData
updated 10 hours ago by
Gordon Smyth
53k • written 4 days ago by
DN
• 0
0
votes
12
replies
566
views
Making a Full Rank Model for Allele-Specific Expression with DESeq2
DESeq2
updated 2 days ago by
Gordon Smyth
53k • written 5 days ago by
chp265
• 0
0
votes
0
replies
35
views
Changing multiple display parameters of a specific exon in GeneRegionTrack
Gviz
4 days ago
Xenia
• 0
0
votes
2
replies
203
views
Are individual-mouse-based statistics possible in CellChat?
Bioconductor
CellChat
updated 2 days ago by
LillianaVolkman99
• 0 • written 11 days ago by
Omer
• 0
0
votes
6
replies
566
views
BiocParallel (and DESeq2) - wrong args for environment subassignment
BiocParallel
DESeq2
updated 6 days ago by
Martin Morgan
25k • written 7 weeks ago by
Benjamin
• 0
0
votes
1
reply
230
views
DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups
shrinkage
DESeq2
contrast
updated 5 days ago by
ATpoint
★ 5.0k • written 9 days ago by
ja569116
• 0
1
vote
3
replies
266
views
limpa analysis advice
limpa
updated 6 days ago by
Gordon Smyth
53k • written 9 days ago by
SamGG
▴ 360
0
votes
0
replies
68
views
News:
The BioC2026 Sticker Design Contest is Open!
Bioconductor
Conference
9 days ago
laurah ondari
• 0
4
votes
2
replies
258
views
When to use edgeR or limma
edgeR
limma
updated 9 days ago by
Gordon Smyth
53k • written 11 days ago by
abzhang97
• 0
1
vote
3
replies
189
views
Incosistencies in buildSNNGraph() function
scran
seurat
written 15 days ago by
Lucas
• 0
0
votes
2
replies
796
views
A problem occurs when running the monocle2
monocle
written 4 months ago by
yuheng_yang
• 0
0
votes
7
replies
422
views
limpa-blank normalization and Spectronaut's PTM stoichiometry
limpa
updated 4 days ago by
Gordon Smyth
53k • written 11 days ago by
emily.wolfrum
• 0
0
votes
1
reply
91
views
Questions about bacon QC and correction on EWAS results
bacon
12 days ago
sup0903
• 0
3
votes
4
replies
266
views
Question about the filterByExpr function inputs in edgeR
RNASeq
filter
design
edgeR
model.matrix
12 days ago • updated 11 days ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
112
views
Development of MSstat workflow to analyze DIA time series data
MSstats
updated 12 days ago by
Gordon Smyth
53k • written 12 days ago by
sithurandi
• 0
0
votes
0
replies
140
views
MSstatsPTM-SpectronauttoMSstatsPTMFormat-failing with TAIR10 Locus Tags: Issue with UniProt-centric protein ID parsing
Bioconductor
MSstatsPTM
12 days ago
srkingwu
• 0
8
votes
8
replies
2.9k
views
Confounded design, batch effect correction (edgeR)
rnaseq
edger
differential gene expression
batch effect
written 7.4 years ago by
Laura
▴ 20
0
votes
0
replies
66
views
Junction CPM via Snapcount and Recount3
snapcount
recount3
13 days ago
henry.tietz
• 0
3
votes
4
replies
383
views
Clarification on counting in Rsubread (featureCounts)
featureCounts
Rsubread
updated 12 days ago by
Gordon Smyth
53k • written 5 weeks ago by
Luca
• 0
0
votes
0
replies
63
views
News:
Online RNA-seq analysis course 26-29th Janury
EnhancedVolcano
GSEABase
pheatmap
Workshop
DESeq2
13 days ago
Frances Turner
▴ 20
0
votes
1
reply
92
views
How to convert .raw data for use in xcms
xcms
written 13 days ago by
Monica
• 0
0
votes
1
reply
188
views
Job:
Open Positions for Doctoral Researchers in Molecular Medicine
JobPosting
written 13 days ago by
rubina.tabassum
• 0
1
vote
1
reply
136
views
News:
Bioconductor Maintainer Application
maintainer
policy
Bioconductor
Devel
devel
written 16 days ago by
shepherl
4.3k
0
votes
1
reply
465
views
News:
GSEA in R/Bioconductor course
GSEABenchmarkeR
pairedGSEA
GeneSetEnrichment
written 11 months ago by
info
▴ 10
0
votes
1
reply
344
views
News:
Announcing a New Journal - Bioinformatics Methods and Applications - Now Open for Submissions
Bioconductor
written 6 months ago by
Wei Shi
★ 3.6k
0
votes
2
replies
2.5k
views
ChAMP pipeline error (champ.import)
software error
written 6.8 years ago by
mhebba
• 0
0
votes
2
replies
274
views
Combining two proteomics datasets with limpa
limpa
ProteomicsWorkflow
limma
18 days ago • updated 4 days ago
Andrew Pattison
• 0
0
votes
0
replies
135
views
Job:
Jobs at Ensembl
ensembldb
19 days ago
Aleena_Ensembl
▴ 30
0
votes
0
replies
11
views
Spam:
Is there a way to map Excel fields to VCF contacts for accurate conversion?
ComputationalChemistry
Technology
Software
Website
updated 19 days ago by
shepherl
4.3k • written 19 days ago by
witebir963
0
0
votes
0
replies
85
views
Job:
Job:Computational Biologist position at the University of Alabama at Birmingham
hiring
RNASeq
JobPosting
SingleCell
SpatialData
20 days ago
lianov
• 0
2
votes
3
replies
226
views
please provide a BibTeX citation for "Advanced Single-Cell Analysis with Bioconductor"
Bioconductor
written 20 days ago by
Victor
▴ 10
2
votes
4
replies
235
views
Converting Probe IDs to HGNC symbols
Annotation
biomaRt
GEOquery
written 23 days ago by
Manav
▴ 10
0
votes
3
replies
289
views
How to do differential expresion across time serise with edgeR?
edgeR
timecoursedata
updated 22 days ago by
Gordon Smyth
53k • written 23 days ago by
petergrahamclark
▴ 10
2
votes
3
replies
457
views
Guitar R package requires update due to dependency GenomicFeatures
GenomicFeatures
Guitar
txdbmaker
GenomicRanges
written 27 days ago by
ferran.llobet.cabau
▴ 10
0
votes
2
replies
181
views
ATACseq rudimentary questions
ATACSeq
DiffBind
29 days ago • updated 23 days ago
4747
• 0
1
vote
2
replies
239
views
How to install packages such as TCGAbiolinks, SumarizedExperiment?
TCGAbiolinks
SummarizedExperiment
written 25 days ago by
NewRUser
• 0
0
votes
4
replies
5.6k
views
blockwiseModule crashes in the end and doesn't generate modules
WGCNA
written 2.8 years ago by
mauricio.microbiol
• 0
4
votes
2
replies
416
views
Limma-voom sample weights and impact on DEG numbers
limma
4 weeks ago • updated 20 days ago
A.Barden
▴ 20
0
votes
1
reply
276
views
wgcna module preseravtion taking too long?
WGCNA
updated 4 weeks ago by
ATpoint
★ 5.0k • written 5 weeks ago by
lamia11me
• 0
0
votes
1
reply
361
views
Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
HiC
HiCDCPlus
written 6 weeks ago by
Chaoability
• 0
0
votes
3
replies
343
views
DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
sva
lfcshrink
DESeq2
5 weeks ago • updated 9 days ago
ja569116
• 0
0
votes
5
replies
2.9k
views
Ensembl site unresponsive via biomaRt
biomaRt
written 10 months ago by
hebda
• 0
0
votes
3
replies
298
views
segfault in edgeR glmQLFit
edgeR
updated 4 weeks ago by
Gordon Smyth
53k • written 5 weeks ago by
Mark
• 0
0
votes
4
replies
608
views
How does contrasts.fit do in limma to extract comparisons with a model having interaction terms?
limma
updated 20 days ago by
jtsy6383
• 0 • written 5 weeks ago by
Durian
• 0
0
votes
1
reply
274
views
News:
Opportunity to host EuroBioC2026 Preconference workshops!
Conference
Workshop
Bioconductor
written 5 weeks ago by
laurah ondari
• 0
0
votes
1
reply
167
views
NUPOP usage
TOAST
updated 6 weeks ago by
shepherl
4.3k • written 6 weeks ago by
Mohammad
• 0
1
vote
2
replies
377
views
News:
Important: Bioconductor Release 3.22 Delayed
release
written 3 months ago by
shepherl
4.3k
0
votes
1
reply
246
views
PTM analysis in LIMPA
limpa
updated 10 days ago by
Gordon Smyth
53k • written 7 weeks ago by
Diego FGR
• 0
1
vote
1
reply
369
views
News:
Upcoming Ensembl API and data access changes - new blog post available
ensembl
mart
biomaRt
ensembldb
updated 2 days ago by
Hugo Gruson
• 0 • written 7 weeks ago by
Ensembl_Jorge
▴ 10
46,730 results • Page
1 of 935
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Answer: Justify title track when rotation = 0
by
Benson
• 0
Navigating title tracks can be tricky, especially with rotation settings. I faced similar confusion [geometry dash free][1] when starting o…
Comment: Justify title track when rotation = 0
by
TikTs33ssalpc
• 0
It sounds like your track title alignment issue comes from how the title panel anchors and rotates text. When you set rotation , the title …
Comment: Open Positions for Doctoral Researchers in Molecular Medicine
by
TikTs33ssalpc
• 0
This rotation style program sounds like a great way to explore different fields before committing to one. Similarly, apkgamex lets users ex…
Comment: Bioconductor Maintainer Application
by
TikTs33ssalpc
• 0
This compliance focused approach makes a lot of sense. Clear reminders and opt in policies help maintain trust, similar to how users look f…
Comment: Bile acid analysis with limpa
by
ATpoint
★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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