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0
replies
20
views
DESeq2 for candidate gene analysis
Bioconductor
22 hours ago
piffelpaff
• 0
0
votes
1
reply
34
views
Problem with viewGO(ref_path) in SpliceWiz
Bioconductor
SpliceWiz
written 1 day ago by
jalte.jelsing
• 0
0
votes
0
replies
14
views
Problem with the TMB plot
Bioconductor
1 day ago
nayanajose
• 0
0
votes
3
replies
1.3k
views
problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq
WGCNA package
soft power
written 7.2 years ago by
modarzi
▴ 10
0
votes
0
replies
42
views
After running samtools, the featureCounts command crashed.
RNASeqData
RNASeq
rnaseqGene
3 days ago
Rui
• 0
0
votes
6
replies
151
views
GO.db and others package Download failure
GO.db
Bioconductor
updated 1 day ago by
James W. MacDonald
68k • written 3 days ago by
Skyler
• 0
0
votes
0
replies
7
views
Spam:
Best Rehab Center In India | Luxury, Alcohol & Mental Health Care
COSMIC.67
3 days ago
Best Rehab Center
0
0
votes
2
replies
90
views
replace cat with message in glmTreat when lfc = 0
edgeR
glmTreat
updated 1 day ago by
Gordon Smyth
53k • written 5 days ago by
oliverd
• 0
0
votes
0
replies
20
views
Job:
Research and Service Group Leader positions in AI in Biology at EMBL
Bioconductor
3 days ago
Wolfgang Huber
★ 13k
0
votes
1
reply
43
views
Differential motif analysis
motifmatchr
updated 4 days ago by
James W. MacDonald
68k • written 4 days ago by
Marek Gierlinski
▴ 30
1
vote
3
replies
147
views
DESeq2 interactions
DESeq2
updated 4 days ago by
swbarnes2
★ 1.4k • written 6 days ago by
Michael
• 0
0
votes
0
replies
25
views
News:
Ensembl 115 has been released!
ensembl
ensembldb
biomaRt
5 days ago
Ensembl_Jorge
• 0
0
votes
0
replies
28
views
A problem occurs when running the monocle2
monocle
5 days ago
yuheng_yang
• 0
0
votes
0
replies
22
views
News:
Bioconductor 3.22 Release Schedule
Devel
Release
Bioconductor
5 days ago
shepherl
4.2k
1
vote
3
replies
134
views
readDNAStringSet with non DNA characters
Biostrings
5 days ago • updated 3 days ago
biomiha
▴ 20
0
votes
2
replies
123
views
readBam vs read_bam_insert_metrics
cfDNAPro
cfDNA
updated 5 days ago by
James W. MacDonald
68k • written 8 days ago by
rtrivedi1
▴ 10
1
vote
3
replies
230
views
How to construct a BSgenome object from a custom genome assembly using BSgenomeForge?
BSgenome
BSgenomeForge
updated 5 days ago by
James W. MacDonald
68k • written 8 days ago by
mat149
▴ 80
3
votes
14
replies
791
views
DESeq2 used with zinbwave weights - Differences on contrasts calculations
zinbwave
DESeq2
written 7 weeks ago by
Aurélie
• 0
5
votes
11
replies
476
views
Guidance on limma for pseudobulk scRNA-seq with multi-factor design
limma
RNASeq
scRNAseq
9 days ago • updated 3 days ago
abaed
• 0
0
votes
0
replies
45
views
Questions about pseudo counts from RUVSeq
RUVSeq
9 days ago
Yuxiang
• 0
0
votes
1
reply
3.0k
views
Job:
Postdoctoral Research Position in Cancer Genomics at Dana-Farber Cancer Institute/Harvard University
cancer
computational biology
rnaseq
chipseq
Job
written 10.9 years ago by
gcyuan
• 0
0
votes
2
replies
130
views
3-factor DESeq2 trime-series analysis
time-series
DESeq2
10 days ago • updated 9 days ago
gogeni5529
• 0
0
votes
3
replies
234
views
Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg?
RUVSeq
DESeq2
updated 9 days ago by
Michael Love
43k • written 18 days ago by
yongjie.wang
• 0
0
votes
1
reply
212
views
Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysis of single-cell RNA-seq data?
apeglm
DESeq2
updated 12 days ago by
Michael Love
43k • written 26 days ago by
KS
• 0
0
votes
3
replies
145
views
A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::select()
org.Ss.eg.db
AnnotationDbi
written 22 days ago by
Adam Munhall
• 0
0
votes
4
replies
233
views
voomLmFit fitted log-CPM values
limma
edgeR
updated 14 days ago by
Gordon Smyth
53k • written 15 days ago by
Lina
▴ 10
0
votes
0
replies
74
views
Extract snp information from genomic regions with biomaRt -> "oaries_snp"
biomaRt
updated 17 days ago by
James W. MacDonald
68k • written 17 days ago by
Jesus
• 0
1
vote
3
replies
230
views
ROAST compare results with complex design
limma
mroast
roast
CAMERA
written 18 days ago by
Jiahao Tian
• 0
0
votes
0
replies
5
views
Spam:
Exploring Robotic Hair Restoration Procedure
COSMIC.67
22 days ago
paseje6172
0
0
votes
1
reply
119
views
Length of 'dimnames' [1] not equal to array extent
SingleCellExperiment
singlecelle
scRNAseq
22 days ago • updated 16 days ago
Francesco Silvestro
• 0
0
votes
0
replies
67
views
News:
Course: Single-cell analysis with R/Bioconductor
SingleCellExperiment
SingleCell
SingleCellWorkflow
SingleCellData
23 days ago
Ludwig Geistlinger
▴ 70
3
votes
5
replies
962
views
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
DESeq2
updated 18 days ago by
James W. MacDonald
68k • written 24 days ago by
snijesh
▴ 200
0
votes
1
reply
283
views
News:
Bioconductor Board Nominations Open
TAB
Bioconductor
CAB
written 9 weeks ago by
shepherl
4.2k
2
votes
8
replies
478
views
Are voomByGroup and voomLmFit compatible?
limma
voomLmFit
voomByGroup
updated 17 days ago by
Gordon Smyth
53k • written 5 weeks ago by
richardallenfriedmanbrooklyn
▴ 30
0
votes
3
replies
1.2k
views
How to analyze Affy data, CEL files not available
affy
affy
written 18.6 years ago by
Bobby Prill
▴ 60
0
votes
1
reply
138
views
org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
MAMDC4
org.Ss.eg.db
AnnotationDbi
written 28 days ago by
Adam Munhall
• 0
0
votes
0
replies
75
views
mzR-Rcpp compiler version issue
Rcpp
Perseus
mzR
29 days ago
bniego
• 0
0
votes
0
replies
89
views
Corrupted SQLite while trying to install PANTHER.db?
SQLite
PANTHER.db
29 days ago
Alan
• 0
0
votes
5
replies
504
views
HMP_2019_t2d data origin
curatedMetagenomicData
updated 29 days ago by
Levi Waldron
★ 1.1k • written 9 weeks ago by
Blan
• 0
0
votes
0
replies
80
views
Finding duplicated entries in GRangesList
GenomicRanges
29 days ago
Marco
• 0
17
votes
45
replies
12k
views
Can NanoString data be analyzed using DESeq2?
NanoString
Differential Expressed Genes Analysis
DESeq2
updated 25 days ago by
James W. MacDonald
68k • written 6.2 years ago by
lim6432
▴ 60
0
votes
0
replies
94
views
DESeq2 on non-RNASeq counts data
DESeq2
4 weeks ago
vs
• 0
0
votes
0
replies
92
views
sigDF object in sesame
sesame
sesameData
4 weeks ago
Ramiro
• 0
3
votes
4
replies
7.8k
views
Calculation of module membership in WGCNA
WGCNA
RNA-seq
ModuleMembership
Network
Hub gene
written 5.1 years ago by
Arindam
▴ 80
1
vote
9
replies
791
views
Using DESeq2 on single cell RNA Seq data of same cell type but different conditions that were pseudo bulked
DESeq2
scRNAseq
4 weeks ago • updated 29 days ago
Raya
• 0
0
votes
11
replies
454
views
Getting way too many DEGs with LRT for time-series RNA-seq!
TimeCourse
DESeq2
5 weeks ago • updated 4 weeks ago
Denise
• 0
3
votes
4
replies
314
views
p-adjusted values in multiple comparisons
StatisticalMethod
limma
RnaSeqSampleSizeData
updated 4 days ago by
Josh
• 0 • written 5 weeks ago by
ocanorocabayera
• 0
2
votes
6
replies
398
views
Very different log2 Fold changes with DESeq2 and explict calculation
DESeq2
5 weeks ago
richardallenfriedmanbrooklyn
▴ 30
0
votes
3
replies
191
views
DESeq2 inconsistent fits depending on model design with interacting factors
des
DESeq2
written 5 weeks ago by
fedor.bezrukov
▴ 10
0
votes
2
replies
174
views
Create consensusMatrix for codon bases
Biostrings
updated 5 weeks ago by
James W. MacDonald
68k • written 5 weeks ago by
Hassan
• 0
46,633 results • Page
1 of 933
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Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexecutor4
• 0
FFH4X is a [Free Fire mod][1] menu APK that offers cheats like auto headshot, aimbot, ESP, wallhack, and unlimited skins. Players use it to…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure
by
Skyler
• 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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