Question: z-score with DESeq2?
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gravatar for andrebolerbarros
5 weeks ago by
andrebolerbarros10 wrote:

Hello everyone,

Do you know if it's possible to use Z-score values for counts normalized using DESeq2? My main objective is to get mean values of gene expression for several populations, mainly for visualization objectives.

Thanks in advance,

André

deseq2 • 72 views
ADD COMMENTlink modified 5 weeks ago by Michael Love23k • written 5 weeks ago by andrebolerbarros10
Answer: z-score with DESeq2?
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gravatar for Michael Love
5 weeks ago by
Michael Love23k
United States
Michael Love23k wrote:

We have two transformations in DESeq2 for producing log scale data, see here:

https://bioconductor.org/packages/release/workflows/vignettes/rnaseqGene/inst/doc/rnaseqGene.html#the-variance-stabilizing-transformation-and-the-rlog

ADD COMMENTlink written 5 weeks ago by Michael Love23k
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