Question: What does SNPRelate::snpgdsDiss calculate?
0
3 months ago by
grp20090
grp20090 wrote:

The documentation for the snpgdsDiss function in the SNPRelate package says:

The details will be described in future.

The description of the function is

Calculate the individual dissimilarities for each pair of individuals.

What exactly does this function calculate and where can I find it defined?

snprelate • 77 views
modified 3 months ago by zhengx30 • written 3 months ago by grp20090
1
3 months ago by
zhengx30
United States
zhengx30 wrote:

See: Weir BS, Goudet J. A Unified Characterization of Population Structure and Relatedness. Genetics. 2017 Aug;206(4):2085-2103. doi: 10.1534/genetics.116.198424.

snpgdsDiss() returns 1 - beta_ij.