What does SNPRelate::snpgdsDiss calculate?
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grp2009 • 0
@grp2009-11057
Last seen 2.4 years ago

The documentation for the snpgdsDiss function in the SNPRelate package says:

The details will be described in future.

The description of the function is

Calculate the individual dissimilarities for each pair of individuals.

What exactly does this function calculate and where can I find it defined?

SNPRelate • 249 views
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zhengx ▴ 30
@zhengx-7950
Last seen 2.2 years ago
United States

See: Weir BS, Goudet J. A Unified Characterization of Population Structure and Relatedness. Genetics. 2017 Aug;206(4):2085-2103. doi: 10.1534/genetics.116.198424.

snpgdsDiss() returns 1 - beta_ij.

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