Question: Differential Expression of Microarray Affymetrix data.
gravatar for parita.ratnani
3 months ago by
parita.ratnani0 wrote:

I have data of 700 cases with 46,000 genes trying to study various outcome (Binary outcome) . Please help with Limma code specially with design matrix function in R. Can you please help. Thank you.

limma • 127 views
ADD COMMENTlink written 3 months ago by parita.ratnani0

What have you tried so far, and where, exactly, does the uncertainty lie? Generally, people like to see that you have invested some effort before posting a question in an online forum like this. That's because we invest effort in providing answers. There are countless examples across the World Wide Web of how to process Affymetrix microarray data, including how to construct the design matrix. There is also the limma manual pages. Edit: for Affymetrix array pre-processing, take a look at oligo and affy packages.

ADD REPLYlink modified 3 months ago • written 3 months ago by Kevin Blighe200
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