I'm running a VCF file through singeR in order to get a mutation matrix; however, I keep getting this error. What could be causing it and how can I fix it, in layman's terms? Thank you!
Error output, picture: https://ibb.co/4Jw79hT
Error output, no picture:
mut <- genCountMatrixFromVcf(BSgenome.Hsapiens.UCSC.hg19, vcfobj) Error in .getOneSeqFromBSgenomeMultipleSequences(x, name, start, NA, width, : sequence 1 not found In addition: Warning message: In .Seqinfo.mergexy(x, y) : The 2 combined objects have no sequence levels in common. (Use suppressWarnings() to suppress this warning.)