Question: Heatmap of selected genes
0
gravatar for danikadigiacomo
3 months ago by
danikadigiacomo0 wrote:

Hi all! I analyzed my RNAseq data with DESeq2 and I obtained a nice unsupervised Heatmap with my top 20 or top 50 DEGs. Now I would create a Heatmap showing only a list of about 15 genes of interest. Is there a way to do it? Thank you, Danika

rnaseq deseq2 heatmap degs • 198 views
ADD COMMENTlink modified 3 months ago by mikhael.manurung200 • written 3 months ago by danikadigiacomo0
Answer: Heatmap of selected genes
0
gravatar for mikhael.manurung
3 months ago by
Netherlands
mikhael.manurung200 wrote:

You can do this easily with pheatmap package from CRAN (or ComplexHeatmap if you want something from Bioconductor).

pheatmap(your_deg_matrix)

Dave Tang made a good tutorial on this.

ADD COMMENTlink written 3 months ago by mikhael.manurung200
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 320 users visited in the last hour