Question: Heatmap of selected genes
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gravatar for danikadigiacomo
7 weeks ago by
danikadigiacomo0 wrote:

Hi all! I analyzed my RNAseq data with DESeq2 and I obtained a nice unsupervised Heatmap with my top 20 or top 50 DEGs. Now I would create a Heatmap showing only a list of about 15 genes of interest. Is there a way to do it? Thank you, Danika

rnaseq deseq2 heatmap degs • 109 views
ADD COMMENTlink modified 7 weeks ago by mikhael.manurung180 • written 7 weeks ago by danikadigiacomo0
Answer: Heatmap of selected genes
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gravatar for mikhael.manurung
7 weeks ago by
Netherlands
mikhael.manurung180 wrote:

You can do this easily with pheatmap package from CRAN (or ComplexHeatmap if you want something from Bioconductor).

pheatmap(your_deg_matrix)

Dave Tang made a good tutorial on this.

ADD COMMENTlink written 7 weeks ago by mikhael.manurung180
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