Bioconductor DEGs

Showing : DEGs • reset

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29k

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deseq2 rna-seq DEGs cooks cutoff

written 7.1 years ago by aishu.jp ▴ 30

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1.1k

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DESeq2 Complicated.contrast DEGs

updated 3.4 years ago by Michael Love 43k • written 3.4 years ago by Mike • -60

-6

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1.3k

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complicated.contrast edgeR DEGs

3.4 years ago Mike • -60

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1.5k

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edgeR DEGs

updated 3.9 years ago by Gordon Smyth 53k • written 3.9 years ago by RR • 0

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1.3k

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edgeR DEGs DESEQ2 RNASeqData

4.0 years ago Raito92 ▴ 60

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1.5k

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RNAseq edgeR DEGs

updated 3.9 years ago by Gordon Smyth 53k • written 4.5 years ago by Ming ▴ 380

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3.9k

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DESeq2 DEGs

4.6 years ago • updated 4.5 years ago Ming ▴ 380

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9.6k

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RNASeq EnhancedVolcano DEGs

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by robledoj13 • 0

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1.6k

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DESeq2 Nullcook'svalues 2x3 DEGs

4.9 years ago andreia ▴ 10

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2.2k

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heatmaps DEGs PCA

updated 4.9 years ago by Kevin Blighe ★ 4.0k • written 4.9 years ago by MOHAMMAD • 0

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1.7k

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DEGs DESeq2

5.1 years ago 2021yearsold • 0

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1.3k

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mircomb mrna mirna degs interaction

5.6 years ago andreia ▴ 10

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1.2k

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deseq2 mircomb degs dems

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by andreia ▴ 10

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1.3k

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clusterProfiler Bioconductor R DEGs

5.7 years ago tpm • 0

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3.9k

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edger DEGs normalization

updated 6.0 years ago by Gordon Smyth 53k • written 6.0 years ago by anikng ▴ 10

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1.5k

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edger DEGs

6.1 years ago anikng ▴ 10

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1.6k

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deseq2 rrpp DEGs RNAseq

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by gmchaput • 0

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5.6k

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heatmap DEGs RNAseq DESeq2

updated 6.5 years ago by mikhael.manurung ▴ 280 • written 6.5 years ago by danikadigiacomo • 0

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1.7k

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edger degs paired design

updated 7.6 years ago by Gordon Smyth 53k • written 7.6 years ago by takumima ▴ 10

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2.9k

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limma heatmap DEGs

updated 8.0 years ago by Gordon Smyth 53k • written 8.0 years ago by lawarde.ankita1 ▴ 30

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1.5k

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edgeR DEGS common disperion

updated 8.5 years ago by Aaron Lun ★ 29k • written 8.5 years ago by baus87 • 0

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3.7k

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limma microarray DEGs p values lfc

8.6 years ago rkp • 0

22 results • Page 1 of 1

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Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0

the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k