Question: a newbie question on ConsensusClusterPlus
0
gravatar for niki.nowhere
3 months ago by
niki.nowhere0 wrote:

hi, i performed consensus clustering using K-means algorithm as follows:

results <- ConsensusClusterPlus(d, maxK=10, rep=1000, pItem=0.8, pFeature=1, clusterAlg="km")

now I decided to choose K=4, and want to draw a heatmap showing a row dendrogram for features used for clustering and column labels for clusters so that I can identify determining features for each cluster.

i've googled about it and found a tutorial (https://rpubs.com/cytrix1/317328), but i'm not quite sure whether it's a right choice for me or not. is results[[4]]["consensusTree"] for this purpose? any kind of comments would be greatly appreciated. thanks!!

ADD COMMENTlink written 3 months ago by niki.nowhere0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 173 users visited in the last hour