Question: GUIDEseq outputDir error
0
gravatar for tomas.rodriguez
4 weeks ago by
tomas.rodriguez0 wrote:

Hi Julie,

Given the below input, GUIDEseqAnalysis(outputDir) only stores "PlusMinusPeaksMerged.xls" and "offTargetsInPeakRegions.xls" in the specified directory. "#name#bamReadSummary.xls" and "#name#PlusMinusPeaksMerged.bed" are stored in the working directory. Is this intentional?

guideSeqResults <- GUIDEseqAnalysis(alignment.inputfile = c("Sc-STS3.bam","negSc-STS3.bam"), umi.inputfile=c("UMIs.txt","UMIs.txt"), gRNA.file = "guiderun1.fa", max.mismatch = 10, BSgenomeName = Hsapiens,txdb = TxDb.Hsapiens.UCSC.hg38.knownGene,orgAnn = org.Hs.egSYMBOL, outputDir="Sc-STS3",n.cores.max = 5)

Thanks,

Tomás

guideseq • 37 views
ADD COMMENTlink modified 4 weeks ago by Julie Zhu4.0k • written 4 weeks ago by tomas.rodriguez0
Answer: GUIDEseq outputDir error
0
gravatar for Julie Zhu
4 weeks ago by
Julie Zhu4.0k
United States
Julie Zhu4.0k wrote:

Hi Tom,

It’s intentional. The files in the working directory are for debugging.

Best regards,

Julie

.xls" and "#

ADD COMMENTlink written 4 weeks ago by Julie Zhu4.0k
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