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GUIDEseq
•
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0
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replies
466
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
19 months ago
StayM
• 0
0
votes
6
replies
1.8k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 3.5 years ago by
Julie Zhu
★ 4.3k • written 3.6 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
959
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 3.7 years ago by
Julie Zhu
★ 4.3k • written 3.7 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
713
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
3.7 years ago
sharvari gujja
▴ 40
0
votes
0
replies
695
views
GUIDEseq: read count for each offtarget
GUIDEseq
3.7 years ago
sharvari gujja
▴ 40
0
votes
0
replies
784
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
3.8 years ago
sharvari gujja
▴ 40
3
votes
1
reply
1.1k
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 5.0 years ago by
Julie Zhu
★ 4.3k • written 5.0 years ago by
David Kuo
• 0
0
votes
2
replies
1.4k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 5.0 years ago by
Julie Zhu
★ 4.3k • written 5.0 years ago by
Tiffany
• 0
0
votes
4
replies
1.5k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.3k
views
GUIDEseq BED input error
GUIDEseq
6.2 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.3k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
1.0k
views
GUIDEseq outputDir error
GUIDEseq
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.5k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
986
views
GUIDEseq bam input
GUIDEseq
bam
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.5k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
8.3 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
2.1k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 8.5 years ago by
Julie Zhu
★ 4.3k • written 8.5 years ago by
aamir.mir
• 0
2
votes
1
reply
1.5k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 8.5 years ago by
Julie Zhu
★ 4.3k • written 8.5 years ago by
aamir.mir
• 0
17 results • Page
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mudasarnaeem2020
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Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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