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GUIDEseq
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467
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
19 months ago
StayM
• 0
0
votes
6
replies
1.8k
views
Option to override removal of duplicate reads - GUIDEseq
GUIDEseq
updated 3.6 years ago by
Julie Zhu
★ 4.3k • written 3.6 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
976
views
GUIDEseq - Error combining individual steps into the pipeline
GUIDEseq
updated 3.8 years ago by
Julie Zhu
★ 4.3k • written 3.8 years ago by
sharvari gujja
▴ 40
0
votes
0
replies
717
views
GUIDEseq - filtering offtarget sites present in background controls
GUIDEseq
3.8 years ago
sharvari gujja
▴ 40
0
votes
0
replies
697
views
GUIDEseq: read count for each offtarget
GUIDEseq
3.8 years ago
sharvari gujja
▴ 40
0
votes
0
replies
785
views
Question about input to binReads.sh in GUIDEseq
GUIDEseq
3.8 years ago
sharvari gujja
▴ 40
3
votes
1
reply
1.1k
views
Major on-target peak not appearing in GUIDEseq results
GUIDEseq
updated 5.0 years ago by
Julie Zhu
★ 4.3k • written 5.0 years ago by
David Kuo
• 0
0
votes
2
replies
1.4k
views
getUniqueCleavageEvents() not working in GUIDEseq package
GUIDEseq
updated 5.0 years ago by
Julie Zhu
★ 4.3k • written 5.0 years ago by
Tiffany
• 0
0
votes
4
replies
1.5k
views
GUIDEseq Error using offTargetAnalysisOfPeakRegions
GUIDEseq
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
tomas.rodriguez
▴ 10
1
vote
3
replies
1.3k
views
GUIDEseq BED input error
GUIDEseq
6.2 years ago
tomas.rodriguez
▴ 10
0
votes
2
replies
1.4k
views
GUIDEseq Error in GAlignmentPairs
GAlignmentPairs
GUIDEseq
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
1.0k
views
GUIDEseq outputDir error
GUIDEseq
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
tomas.rodriguez
▴ 10
0
votes
3
replies
1.5k
views
GUIDEseq plus/minus strand inputs
GUIDEseq
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
tomas.rodriguez
▴ 10
0
votes
1
reply
990
views
GUIDEseq bam input
GUIDEseq
bam
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
tomas.rodriguez
▴ 10
0
votes
0
replies
1.5k
views
Analyzing CIRCLE-seq data using GUIDEseq package
GUIDEseq
CIRCLE-seq
8.3 years ago
Julie Zhu
★ 4.3k
2
votes
4
replies
2.1k
views
GUIDESeq analysis - handling biological and technical replicates
guideseq
updated 8.5 years ago by
Julie Zhu
★ 4.3k • written 8.5 years ago by
aamir.mir
• 0
2
votes
1
reply
1.5k
views
createBarcodeFasta in GUIDEseq
GUIDEseq
updated 8.5 years ago by
Julie Zhu
★ 4.3k • written 8.5 years ago by
aamir.mir
• 0
17 results • Page
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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?
by
Gordon Smyth
53k
I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…
Answer: Which preprocessing steps are needed before running limpa?
by
Gordon Smyth
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Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
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by
Korneel
• 0
Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…
Comment: Pathway abundance data from Curatedmetagenomics
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yesquokkan
• 0
Hello, I was also wondering about the same issue. Did you figure it out?
Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2
by
colinmccornack
• 0
FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
Votes
Answer: Subsetting data verses contrasts [DESeq2]?
A: WGCNA differences two groups 10 replicates each group
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Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
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