We have upgraded R 3.2 to R 3.6 version . I order to install few packages it is asking to install BiocManger. I know how to do it inside R commandline :
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
But I need to do it outside R commandline. Is it possible to install "BiocManager" command line via bash command ? We used this command for biocLite :
R -e "source('http://bioconductor.org/biocLite.R'); biocLite(); biocLite(c('DESeq'))”
Is it possible to have similar command for BiocManger ?