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Recent ...
Replies
Comment: Weird output of DESeq2 when using single sample from one group agains the other
by
Michael Love
35k
See the 2014 paper, the MLE LFC is found via IRLS:
"We use the standard iteratively reweighted least-squares algorithm [12] for each gene’…
Comment: Weird output of DESeq2 when using single sample from one group agains the other
by
FantasticAI
•
0
Thank you for the help. Sorry for keep asking silly questions: I wonder given 2 groups (A and B), and each group has 6 samples, how does th…
Answer: DESeq2 Responder vs Non-Responders nested design
by
Michael Love
35k
Unfortunately, I have to reserve my time on the support site for software related questions. For consultation about statistical design and …
Comment: How to use subjunc for differential splicing analysis?
by
Assa Yeroslaviz
★
1.5k
I assume, that it would make more sense to quantify the reads based on the gene-level and not the exon-level, following by using the `diffS…
Comment: Reading large file (15GB) in R
by
nabiyogesh
•
0
Thanks Sean,
I am getting below error with fread, I am running this on HPC with 500GB.
> library(data.table)
data.table 1.14.2 u…
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