Question: DEP package - Understanding the results table
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gravatar for rina
9 weeks ago by
rina0
rina0 wrote:

Hi all,

I am using the DEP package to identify the differentially expressed proteins from my MS results. I have a naive question about the results table. When we get a ratio of -2, for example, for protein A in the contrast Cond1vsCond2. Does that mean that protein A is underexpressed in Cond2 when comparing to Cond1? Or is it the other way around?

Thank you a lot in advance for your help!

proteomics logfc dep • 50 views
ADD COMMENTlink written 9 weeks ago by rina0
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