DEP package - Understanding the results table
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rina ▴ 20
@rina-16738
Last seen 3 days ago
France

Hi all,

I am using the DEP package to identify the differentially expressed proteins from my MS results. I have a naive question about the results table. When we get a ratio of -2, for example, for protein A in the contrast Cond1vsCond2. Does that mean that protein A is underexpressed in Cond2 when comparing to Cond1? Or is it the other way around?

Thank you a lot in advance for your help!

dep proteomics logFC • 303 views
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