Showing : proteomics • reset
4
votes
3
replies
161
views
Differential protein/biomarker expression using limma: is that possible?
Proteomics NPX limma
updated 7 weeks ago by 42k • written 8 weeks ago by ▴ 10
5
votes
6
replies
262
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 8 weeks ago by 42k • written 9 weeks ago by ▴ 10
0
votes
0
replies
73
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Limma design multi-level experiment with 3 time points
R proteomics limma
9 weeks ago ellen2270 • 0
0
votes
4
replies
133
views
DEP - Run filter_missval() with a threshold ranging from 0 to 3
proteomics DEP
9 weeks ago rina • 0
0
votes
0
replies
88
views
Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
12 weeks ago Robert Castelo ★ 2.7k
2
votes
1
reply
134
views
Convert UniProt Entry Names into Gene Symbols
Proteomics ProteomicsWorkflow UniProt.ws
updated 3 months ago by 56k • written 3 months ago by ★ 1.5k
0
votes
0
replies
180
views
Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
4 months ago Laura • 0
1
vote
2
replies
128
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calculate theoretical isotope distribution give the AA sequence
Metabolomics proteomics MassSpectrometry
4 months ago Oliver • 0
0
votes
3
replies
114
views
Why I can not install rTANDEM?
MassSpectrometry Proteomics mzR
5 months ago • updated 4 months ago Gilad • 0
1
vote
2
replies
135
views
error in installation of 'org.Hs.eg.db'
proteomics GenomicSequence
updated 5 months ago by ▴ 40 • written 5 months ago by • 0
5
votes
6
replies
243
views
possible package naming conflict
proteomics
5 months ago Tobias ▴ 30
1
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0
replies
95
views
News: Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow proteomics Proteome
5 months ago info ▴ 10
0
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0
replies
67
views
Which software can work withThermo ProteomeDiscover software output?
ProteomicsWorkflow proteomics proteinProfiles
5 months ago yueli7 ▴ 10
0
votes
1
reply
120
views
R package to change protein *.msf file to any readable file
Proteome ProteomicsWorkflow proteomics
updated 5 months ago by ▴ 730 • written 5 months ago by ▴ 10
0
votes
0
replies
128
views
Job: Data Scientist Proteomics (100%), Biozentrum, University of Basel, Switzerland
Switzerland JobPosting Basel Proteomics
5 months ago Robert Ivanek ▴ 670
0
votes
3
replies
226
views
Find DEPs among TMT labeling proteom time course data by limma
limma proteomics TMTlabeling timecoursedata
updated 6 months ago by ▴ 270 • written 6 months ago by • 0
3
votes
0
replies
265
views
Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
7 months ago Johannes Rainer ★ 1.9k
2
votes
0
replies
129
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Job: PostDoc position for the analysis of large scale metabolomics data
metabolomics proteomics Job
7 months ago Johannes Rainer ★ 1.9k
1
vote
6
replies
340
views
DEP package: Problems installing on macOS
software error DEP proteomics
updated 9 months ago by 1.5k • written 9 months ago by • 0
0
votes
0
replies
409
views
Job: Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
software engineer RNASeq proteomics Job visualisation
11 months ago Laurent Gatto 1.5k
0
votes
0
replies
75
views
How to generate custom MS database using CustomProDB?
r proteomics
12 months ago nattzy94 • 0
2
votes
1
reply
141
views
Maximum parsimony protein assembly/inference
rforproteomics proteomics msnid msnbase
13 months ago daniel.magnus.bader ▴ 40
2
votes
1
reply
124
views
Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
14 months ago harelarik ▴ 50
1
vote
0
replies
124
views
News: News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
rnaseq course proteomics transcriptomics scrnaseq News
15 months ago Laurent Gatto 1.5k
1
vote
2
replies
306
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Proteomics: package/statistics to compare very different LFQ-proteomes
dep proteomics limma
16 months ago Rob • 0
0
votes
0
replies
184
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Job: Bioinformatician Positions at the University of Chicago BSD Bioinformatics Core
RNA-seq DNA-seq ATAC-seq proteomics microbiome Job
16 months ago lhuang7 ▴ 50
3
votes
0
replies
1.4k
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
18 months ago • updated 16 months ago Gordon Smyth 42k
0
votes
0
replies
209
views
News: May Institute Computation and statistics for mass spectrometry and proteomics
conference mass spectrometry proteomics News
17 months ago shepherl 2.7k
0
votes
0
replies
287
views
News: course - Protemics with R and Bioconductor - 17-19 February 2020 in Berlin
Bioconductor R Proteomics News
17 months ago info ▴ 10
0
votes
0
replies
126
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proteoQC throwing error after running
ProteoQC Proteomics
18 months ago laural710 • 0
0
votes
2
replies
322
views
Total Area Sum Intensity based Normalization for label-free quantitative proteomics
normalization proteomics label-free
18 months ago amolares • 0
0
votes
3
replies
250
views
Writing a loop through multiple fasta files and named files (is it possible with MSGFplus?)
MSGF+ Proteomics r
updated 19 months ago by 25k • written 19 months ago by • 0
0
votes
0
replies
126
views
DEP package - Understanding the results table
dep proteomics logFC
19 months ago rina • 0
0
votes
0
replies
202
views
DEP: TMT analysis from MaxQuant output
DEP TMT proteomics
20 months ago • updated 19 months ago dparrine • 0
1
vote
0
replies
1.5k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
19 months ago Laurent Gatto 1.5k
0
votes
0
replies
198
views
News: Protemics with R and Bioconductor course in Berlin
R Proteomics News
20 months ago info ▴ 10
0
votes
0
replies
212
views
Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
21 months ago tatabox • 0
0
votes
8
replies
1.1k
views
Getting data into (and out of) the MSnSet object
proteomics MSnbase MSnSet readMSnSet msmsTests
updated 21 months ago by • 0 • written 3.3 years ago by ▴ 20
3
votes
3
replies
353
views
Clarification of results tables in DEP
DEP proteomics
updated 21 months ago by ▴ 70 • written 22 months ago by ▴ 480
1
vote
3
replies
324
views
Interpreting Fold Change Calculation in Limma to Non-Statisticians: Sanity Check
Limma proteomics limma
updated 23 months ago by • 0 • written 24 months ago by • 0
2
votes
2
replies
260
views
Where can I get functional bins for Arabidopsis thaliana genome (AGIs)
r proteomics RNA-Seq
updated 2.1 years ago by ▴ 180 • written 2.1 years ago by ▴ 10
0
votes
0
replies
227
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
2.1 years ago Wuschel ▴ 10
0
votes
2
replies
294
views
Comparative proteome analysis of two different species
proteomics LC-MS/MS
updated 2.1 years ago by 1.5k • written 2.1 years ago by • 0
1
vote
0
replies
957
views
Job: Full time and permanent research logistician in Bioinformatics
transcriptomics proteomics job bioinformatician Job
2.2 years ago • updated 2.1 years ago Laurent Gatto 1.5k
1
vote
2
replies
244
views
Errors installing "shinyTANDEM" package
software error proteomics
updated 2.2 years ago by 1.5k • written 2.2 years ago by • 0
1
vote
2
replies
575
views
Errors installing mzR package
proteomics error
updated 2.2 years ago by 1.5k • written 2.2 years ago by • 0
1
vote
0
replies
709
views
News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq deseq2 proteomics transcriptomics workshop News
2.2 years ago Laurent Gatto 1.5k
4
votes
5
replies
462
views
How to convert a xlsx data file to MSnSet format?
msnbase msmstests proteomics lc-ms/ms msnID
updated 2.2 years ago by 1.5k • written 2.3 years ago by ▴ 10
0
votes
3
replies
286
views
What does component or SCX classification in iTRAQ/TMT experiment represent?
proteomics
updated 2.5 years ago by 1.5k • written 2.5 years ago by • 0
1
vote
1
reply
474
views
Define batch effect variables before removing them or getting rid of hidden surrogate variables
batch effect correction sva proteomics
2.5 years ago Sebastian Hesse ▴ 50
50 results • Page 1 of 1
Recent ...
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Answer: DeSeq2 with 2 conditions and 3 time points by swbarnes2 ▴ 730
> do I need to somehow perform a normalization to baseline If you want to compare two things, just compare two things. Adding in the v…
Answer: could not duplicate the fragment length in "Reads to Regions" csaw tutorial by Aaron Lun ★ 26k
Changes in the mapping proportions aren't surprising, the aligner has probably changed a fair bit in the last 6 years since the paper was p…
Comment: Warning in EnhancedVolcano plot by Kevin Blighe 2.9k
Thanks - that is interesting to know.
Comment: Warning in EnhancedVolcano plot by charles.feigin ▴ 20
Sorry, one more quick reply. So, changing lengthConnectors and/or directionConnectors doesn't let me render any more connectors, but I foun…
Comment: Warning in EnhancedVolcano plot by charles.feigin ▴ 20
Ok I understand. I'll play around with these. Thank you!
Votes
Comment: Warning in EnhancedVolcano plot
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Comment: Warning in EnhancedVolcano plot
Comment: Warning in EnhancedVolcano plot
A: How to make a (limma) heatmap displaying gene ID's as rownames
Awards • All
Scholar to Aaron Lun ★ 26k
Popular Question to Nik Tuzov ▴ 70
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