Showing : proteomics • reset
0
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2
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191
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biomaRt to match UniProt protein IDs with protein names
Proteomics UniProtKeywords
updated 11 weeks ago by 62k • written 11 weeks ago by • 0
0
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0
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113
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Job: Open position in the CBIO lab: single-cell proteomics
Proteomics SingleCell JobPosting MassSpectrometry
11 weeks ago Laurent Gatto 1.6k
0
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0
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125
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Job: Open position in the CBIO lab: spatial proteomics and PTMs
pRoloc proteomics Spatial Proteomics MassSpectrometry
12 weeks ago Laurent Gatto 1.6k
0
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0
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129
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News: Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics R Bioconductor MassSpectrometry
3 months ago info ▴ 10
0
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1
reply
466
views
Which software can work withThermo ProteomeDiscover software output?
ProteomicsWorkflow proteomics proteinProfiles
updated 3 months ago by 1.6k • written 2.5 years ago by ▴ 20
1
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3
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400
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Adding ellipse in PCAtools biplot
Biplot FactoMineR proteomics PCAtools ellipse
updated 4 months ago by 3.8k • written 4 months ago by • 0
1
vote
0
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174
views
Problem with VSN: Error in vsnML(sv) : L-BFGS-B needs finite values of 'fn'
justvsn vsn Normalization vsn2 Proteomics
4 months ago Arend ▴ 10
3
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3
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400
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Limma repeated-measures model: Partial NA coefficients
Proteomics limma repeated-measures
updated 4 months ago by 47k • written 4 months ago by • 0
0
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0
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170
views
A question about GWENA R/Bioconductor package
proteomics GWENA Proteomics WGCNA
6 months ago Abdullah • 0
0
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0
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263
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
6 months ago DKFZ International PhD Program ▴ 10
1
vote
3
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435
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Proteomics-time series with repeated measures
Proteomics limma repeatedmeasures TimeSeriesExperiment
7 months ago proteome_AO • 0
0
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5
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453
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Inquiry about suitable package for proteomics study design
Proteomics design
updated 7 months ago by • 0 • written 7 months ago by • 0
0
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0
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226
views
Outliers
Proteomics Proteome
updated 8 months ago by ★ 2.8k • written 8 months ago by • 0
0
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0
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181
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Finding DEGs between two different datasets using limma
Proteomics limma proteomi
8 months ago mfaleevs • 0
0
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3
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500
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Design and contrast matrices for analyzing the effect of two factors of interest on protein expression, controlling for factors and covariates not of…
limma Proteomics ProteomicsWorkflow
updated 9 months ago by 47k • written 9 months ago by • 0
1
vote
0
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302
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
10 months ago Andy Lynch ▴ 120
0
votes
0
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323
views
About normalization of the datasets from Harmonized TCGA data
TCGAbiolinks Proteomics GENOMICS bioinformatics
10 months ago qiz218591 • 0
2
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5
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797
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proteomics analysis
Proteomics analysis
updated 10 months ago by ▴ 90 • written 10 months ago by • 0
1
vote
2
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485
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Questions about msqrob2: raw vs LFQ intensities, model design with blocking
msqrob2 ProteomicsWorkflow proteomics
updated 11 months ago by 47k • written 12 months ago by • 0
2
votes
1
reply
439
views
Extremely low P-values when using Limma on high sample size proteomics data
limma Proteomics
updated 12 months ago by 62k • written 12 months ago by • 0
1
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0
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383
views
Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
13 months ago DKFZ International PhD Program ▴ 10
0
votes
0
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400
views
ProteoMM analysis with two replicates
shotgunproteomics Proteome proteomics Proteomics ProteoMM
14 months ago ary.lech ▴ 10
0
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2
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1.1k
views
Limma Differential Analysis on Proteomics data
Proteomics limma Limma DifferentialExpression
updated 15 months ago by 47k • written 15 months ago by • 0
0
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0
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444
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Job: Tenure-track Group Leader Positions in Computational Biology and Biological Chemistry
bioinformatics genomics proteomics biologicalchemistry sequencing
16 months ago Robert Castelo ★ 3.0k
0
votes
1
reply
944
views
limma/voom for protein intensity data
limma proteomics voom
updated 20 months ago by ★ 2.8k • written 20 months ago by ▴ 60
0
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1
reply
440
views
How to pull-down gene/protein names from the database search, using R ?
proteinProfiles ProteomicsWorkflow ProteomicsAnnotationHubData Proteomics
updated 21 months ago by 47k • written 21 months ago by • 0
0
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5
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658
views
In need of linear modeling help for differential expression (proteomics)
Proteomics limma vsn
updated 21 months ago by 47k • written 21 months ago by • 0
0
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0
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478
views
How to handle the imputation and normalisation?
Proteomics DEP limma
21 months ago barrypraveen • 0
0
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1
reply
653
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How to remove batch effect on DEP protemics package?
Proteomics DEP MassSpectrometryData
updated 22 months ago by • 0 • written 22 months ago by • 0
0
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0
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1.0k
views
what is the difference between iBAQ or LFQ?
Proteomics DEP limma
22 months ago barrypraveen • 0
0
votes
4
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705
views
How to analyse RNA-based protein pulldown mass spectrometry data
Proteomics limma MassSpectrometry
updated 6 weeks ago by 47k • written 23 months ago by • 0
4
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3
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2.3k
views
Differential protein/biomarker expression using limma: is that possible?
Proteomics NPX limma
updated 2.2 years ago by 47k • written 2.2 years ago by ▴ 10
6
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6
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1.1k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 2.2 years ago by 47k • written 2.2 years ago by ▴ 10
0
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0
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662
views
Limma design multi-level experiment with 3 time points
R proteomics limma
2.2 years ago ellen2270 • 0
0
votes
4
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690
views
DEP - Run filter_missval() with a threshold ranging from 0 to 3
proteomics DEP
2.2 years ago rina ▴ 20
0
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0
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639
views
Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
2.3 years ago Robert Castelo ★ 3.0k
2
votes
1
reply
2.3k
views
Convert UniProt Entry Names into Gene Symbols
Proteomics ProteomicsWorkflow UniProt.ws
updated 2.3 years ago by 62k • written 2.3 years ago by ★ 1.5k
0
votes
0
replies
708
views
Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
2.4 years ago Laura • 0
1
vote
2
replies
709
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics proteomics MassSpectrometry
2.4 years ago Oliver • 0
0
votes
3
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703
views
Why I can not install rTANDEM?
MassSpectrometry Proteomics mzR
2.5 years ago Gilad • 0
1
vote
2
replies
705
views
error in installation of 'org.Hs.eg.db'
proteomics GenomicSequence
updated 2.5 years ago by ▴ 90 • written 2.5 years ago by • 0
5
votes
6
replies
1.0k
views
possible package naming conflict
proteomics
2.5 years ago Tobias ▴ 40
1
vote
0
replies
937
views
News: Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow proteomics Proteome
2.5 years ago info ▴ 10
0
votes
1
reply
758
views
R package to change protein *.msf file to any readable file
Proteome ProteomicsWorkflow proteomics
updated 2.5 years ago by ★ 1.2k • written 2.5 years ago by ▴ 20
0
votes
0
replies
612
views
Job: Data Scientist Proteomics (100%), Biozentrum, University of Basel, Switzerland
Switzerland JobPosting Basel Proteomics
2.5 years ago Robert Ivanek ▴ 730
0
votes
3
replies
942
views
Find DEPs among TMT labeling proteom time course data by limma
limma proteomics TMTlabeling timecoursedata
updated 2.6 years ago by ▴ 290 • written 2.6 years ago by • 0
3
votes
0
replies
1.4k
views
Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
2.6 years ago Johannes Rainer ★ 2.0k
2
votes
0
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632
views
Job: PostDoc position for the analysis of large scale metabolomics data
metabolomics proteomics Job
2.7 years ago Johannes Rainer ★ 2.0k
1
vote
6
replies
2.5k
views
DEP package: Problems installing on macOS
software error DEP proteomics
updated 2.9 years ago by 1.6k • written 2.9 years ago by • 0
0
votes
0
replies
891
views
Job: Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
software engineer RNASeq proteomics Job visualisation
3.0 years ago Laurent Gatto 1.6k
50 results • Page 1 of 1
Recent ...
Replies
Answer: Trouble Loading Data into Champ by hfbarrerat • 0
Try myLoad <- champ.load("raw/",arraytype="EPIC")
Comment: BiocGenerics binary is outdated for macOS ARM by jennifer.wokaty ▴ 70
Thanks, Mike, for posting about this and thanks to Lori for noticing the lock. I removed it and RProtoBufLib passes R CMD check. Unfortunat…
Comment: BiocGenerics binary is outdated for macOS ARM by Michael Steinbaugh ▴ 90
Ah thanks for the update. Yeah I see that the flowClust release is the culprit: https://www.bioconductor.org/packages/release/bioc/html/flo…
Comment: Submitting BSgenome package for a new assembly by Manish • 0
Thanks for the info. This is very helpful. -Manish
Comment: Merge 2 accounts, or delete 1 account. by shepherl 3.5k
are you talking specifically on the support site or elsewhere also?
Votes
Comment: BiocGenerics binary is outdated for macOS ARM
flowCore: using read.FCS with which.lines is not time efficient?
Comment: BiocGenerics binary is outdated for macOS ARM
Comment: Submitting BSgenome package for a new assembly
How to create "trait data" file for WGCNA
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