Hi, I am trying to read a series of FASTQ files into R with the
ShortRead package. It reads the first four files fine but gives an error on the fifth:
> test <- readFastq(buddy.file.list[]) Error: Input/Output file(s): /sbgenomics/project-files/_5_buddy_0001.fastq message: invalid character '
Is the invalid character the single quote? Or is it not specified in the error message? There are single quotes in all of my files, but this is the only one that isn't being read.