I was wondering if you guys could help me with the design of my experiment.
Sample Condition Exercise HC1 Healthy No HC2 Healthy No HC3 Healthy No CPC1 CP No CPC2 CP No CPC3 CP No HE1 Healthy Yes HE2 Healthy Yes HE3 Healthy Yes CPE1 CP Yes CPE2 CP Yes CPE3 CP Yes
To look at interactions my design was the following: Full: ~ Condition + Exercise + Condition:Exercise Reduced: ~Condition + Exercise
So, if I want to look at genes that have any difference in the condition, I would do: Full: ~ Condition + Exercise Reduced: ~ Exercise
So, if I want to look at genes that have any difference in the exercise, I would do: Full: ~ Condition + Exercise Reduced: ~ Condition
That would be the way to analyze this data set?
Thanks in advance