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guillermoturiel
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@guillermoturiel-22196
Last seen 5.0 years ago
Hi, I'm having a lot of problems trying to install the package "org.Hs.eg.db" in R. I have previously installed a lot of packages and this is the only one giving me problems. I used this to install it (which works perfectly fine with other packages):
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("org.Hs.eg.db")
And I get this error:
Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'org.Hs.eg.db'
installing the source package ‘org.Hs.eg.db’
trying URL 'https://bioconductor.org/packages/3.10/data/annotation/src/contrib/org.Hs.eg.db_3.10.0.tar.gz'
Content type 'application/x-gzip' length 81813830 bytes (78.0 MB)
downloaded 78.0 MB
* installing *source* package 'org.Hs.eg.db' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in findpack(package, lib.loc) :
there is no package called 'org.Hs.eg.db'
Calls: <Anonymous> -> findpack
Execution halted
ERROR: lazy loading failed for package 'org.Hs.eg.db'
* removing '\\hest.nas.ethz.ch/green_users_all_homes/guruiz/R3UserLibs/org.Hs.eg.db'
The downloaded source packages are in
‘C:\Users\guruiz\AppData\Local\Temp\RtmpiWfeAR\downloaded_packages’
Old packages: 'Biobase', 'BiocNeighbors', 'BiocParallel', 'BiocSingular', 'DelayedArray',
'edgeR', 'GenomicRanges', 'IRanges', 'limma', 'org.Mm.eg.db', 'purrr', 'Rcpp', 'rlang',
'S4Vectors', 'scales', 'scater', 'scran', 'XVector', 'zlibbioc', 'foreign',
'KernSmooth', 'mgcv', 'nlme', 'survival'
Update all/some/none? [a/s/n]: n
Warning message:
In install.packages(...) :
installation of package ‘org.Hs.eg.db’ had non-zero exit status
Any help will be highly appreciated Thanks
sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18362)
Matrix products: default
locale:
[1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United Kingdom.1252
[3] LC_MONETARY=English_United Kingdom.1252 LC_NUMERIC=C
[5] LC_TIME=English_United Kingdom.1252
attached base packages:
[1] parallel stats4 stats graphics grDevices utils datasets methods
[9] base
other attached packages:
[1] AnnotationDbi_1.48.0 IRanges_2.19.16 S4Vectors_0.23.24 Biobase_2.45.1
[5] BiocGenerics_0.32.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.2 digest_0.6.22 crayon_1.3.4 zeallot_0.1.0
[5] DBI_1.0.0 backports_1.1.5 RSQLite_2.1.2 pillar_1.4.2
[9] rlang_0.4.0 blob_1.2.0 vctrs_0.2.0 tools_3.6.1
[13] bit64_0.9-7 bit_1.1-14 compiler_3.6.1 pkgconfig_2.0.3
[17] BiocManager_1.30.10 memoise_1.1.0 tibble_2.1.3