Question: Error with installation of org.Hs.eg.db
0
gravatar for guillermoturiel
24 days ago by
guillermoturiel0 wrote:

Hi, I'm having a lot of problems trying to install the package "org.Hs.eg.db" in R. I have previously installed a lot of packages and this is the only one giving me problems. I used this to install it (which works perfectly fine with other packages):

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("org.Hs.eg.db")

And I get this error:

Bioconductor version 3.10 (BiocManager 1.30.10), R 3.6.1 (2019-07-05)
Installing package(s) 'org.Hs.eg.db'
installing the source package ‘org.Hs.eg.db’

trying URL 'https://bioconductor.org/packages/3.10/data/annotation/src/contrib/org.Hs.eg.db_3.10.0.tar.gz'
Content type 'application/x-gzip' length 81813830 bytes (78.0 MB)
downloaded 78.0 MB

* installing *source* package 'org.Hs.eg.db' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in findpack(package, lib.loc) : 
  there is no package called 'org.Hs.eg.db'
Calls: <Anonymous> -> findpack
Execution halted
ERROR: lazy loading failed for package 'org.Hs.eg.db'
* removing '\\hest.nas.ethz.ch/green_users_all_homes/guruiz/R3UserLibs/org.Hs.eg.db'

The downloaded source packages are in
        ‘C:\Users\guruiz\AppData\Local\Temp\RtmpiWfeAR\downloaded_packages’
Old packages: 'Biobase', 'BiocNeighbors', 'BiocParallel', 'BiocSingular', 'DelayedArray',
  'edgeR', 'GenomicRanges', 'IRanges', 'limma', 'org.Mm.eg.db', 'purrr', 'Rcpp', 'rlang',
  'S4Vectors', 'scales', 'scater', 'scran', 'XVector', 'zlibbioc', 'foreign',
  'KernSmooth', 'mgcv', 'nlme', 'survival'
Update all/some/none? [a/s/n]: n
Warning message:
In install.packages(...) :
  installation of package ‘org.Hs.eg.db’ had non-zero exit status

Any help will be highly appreciated Thanks

sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18362)

Matrix products: default

locale:
[1] LC_COLLATE=English_United Kingdom.1252  LC_CTYPE=English_United Kingdom.1252   
[3] LC_MONETARY=English_United Kingdom.1252 LC_NUMERIC=C                           
[5] LC_TIME=English_United Kingdom.1252    

attached base packages:
[1] parallel  stats4    stats     graphics  grDevices utils     datasets  methods  
[9] base     

other attached packages:
[1] AnnotationDbi_1.48.0 IRanges_2.19.16      S4Vectors_0.23.24    Biobase_2.45.1      
[5] BiocGenerics_0.32.0 

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.2          digest_0.6.22       crayon_1.3.4        zeallot_0.1.0      
 [5] DBI_1.0.0           backports_1.1.5     RSQLite_2.1.2       pillar_1.4.2       
 [9] rlang_0.4.0         blob_1.2.0          vctrs_0.2.0         tools_3.6.1        
[13] bit64_0.9-7         bit_1.1-14          compiler_3.6.1      pkgconfig_2.0.3    
[17] BiocManager_1.30.10 memoise_1.1.0       tibble_2.1.3
ADD COMMENTlink modified 24 days ago by James W. MacDonald52k • written 24 days ago by guillermoturiel0
Answer: Error with installation of org.Hs.eg.db
1
gravatar for James W. MacDonald
24 days ago by
United States
James W. MacDonald52k wrote:

Looks like you are trying to install a package to a network directory. The fix is to map that network dir to a 'local' drive and then install.

ADD COMMENTlink written 24 days ago by James W. MacDonald52k
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